LOC_Os01g62650 (Oryza sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 LOC_Os01g62650 T24381_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g62650.1 PUF 725 759
LOC_Os01g62650.1 PUF 761 795
LOC_Os01g62650.1 PUF 797 831
LOC_Os01g62650.1 PUF 833 867
LOC_Os01g62650.1 PUF 869 903
LOC_Os01g62650.1 PUF 906 939
LOC_Os01g62650.1 PUF 942 975
LOC_Os01g62650.1 PUF 989 1018
LOC_Os01g62650.2 PUF 725 759
LOC_Os01g62650.2 PUF 761 795
LOC_Os01g62650.2 PUF 797 831
LOC_Os01g62650.2 PUF 833 867
LOC_Os01g62650.2 PUF 869 903
LOC_Os01g62650.2 PUF 906 939
LOC_Os01g62650.2 PUF 942 975

Links

Other PUF family RBPs
Other Oryza sativa RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.786
30143.m001162 Ricinus communis 30143.m001162 N 0.833
30143.m001164 Ricinus communis 30143.m001164 N 0.884
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.812
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.815
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.830
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.754
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.853
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.842
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.842
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.842
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.739
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.769
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.873
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.851
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.840
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.851
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.851
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.797
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.844
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.859
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.786
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.775
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.780
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.767
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.759
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.786
e_gw1.96.3.1 Physcomitrella patens e_gw1.96.3.1 N 0.776
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.815
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.819
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.765
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.841
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.841
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.844
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.848
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.844
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.855
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.758
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.852
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.853
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.739
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.762
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.877
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.866
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.796
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.853
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.746
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.842
MDP0000119814 Malus x domestica MDP0000119814 N 0.732
MDP0000150501 Malus x domestica MDP0000150501 N 0.758
MDP0000176743 Malus x domestica MDP0000176743 N 0.772
MDP0000191652 Malus x domestica MDP0000191652 N 0.799
MDP0000314338 Malus x domestica MDP0000314338 N 0.865
MDP0000319167 Malus x domestica MDP0000319167 N 0.855
MDP0000776183 Malus x domestica MDP0000776183 N 0.858
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.780
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.851
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.847
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.796
mgf011401m Mimulus guttatus mgf011401m N 0.757
mgf015234m Mimulus guttatus mgf015234m N 0.815
mgf015734m Mimulus guttatus mgf015734m N 0.825
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.754
PK00601.1 Cannabis sativa PK00601.1 N 0.859
PK01617.1 Cannabis sativa PK01617.1 N 0.791
PK21390.1 Cannabis sativa PK21390.1 N 0.869
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.833
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.772
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.876
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.826
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.887
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.754
ppa000626m Prunus persica ppa000626m N 0.859
ppa000627m Prunus persica ppa000627m N 0.847
ppa000731m Prunus persica ppa000731m N 0.801
SB03G039600 Sorghum bicolor Sb03g039600 N 0.949
SB04G037410 Sorghum bicolor Sb04g037410 N 0.746
SB09G001090 Sorghum bicolor Sb09g001090 N 0.856
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.746
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.815