e_gw1.7.1189.1 (Selaginella moellendorfii)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 e_gw1.7.1189.1 T24747_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.7.1189.1 PUF 2 31
e_gw1.7.1189.1 PUF 33 67
e_gw1.7.1189.1 PUF 72 104
e_gw1.7.1189.1 PUF 105 139
e_gw1.7.1189.1 PUF 141 173
e_gw1.7.1189.1 PUF 178 212
e_gw1.7.1189.1 PUF 214 248
e_gw1.7.1189.1 PUF 259 290

Links

Other PUF family RBPs
Other Selaginella moellendorfii RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.734
30143.m001162 Ricinus communis 30143.m001162 N 0.713
30143.m001164 Ricinus communis 30143.m001164 N 0.753
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.703
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.000
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.703
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.000
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.739
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.757
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.743
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.743
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.711
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.716
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.752
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.732
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.735
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.735
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.748
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.734
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.724
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.730
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.825
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.822
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.844
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.841
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.000
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.703
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.730
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.735
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.728
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.728
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.728
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.731
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.739
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.726
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.732
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.739
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.711
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.701
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.760
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.749
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.840
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.759
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.739
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.716
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.757
MDP0000176743 Malus x domestica MDP0000176743 N 0.715
MDP0000191652 Malus x domestica MDP0000191652 N 0.703
MDP0000314338 Malus x domestica MDP0000314338 N 0.752
MDP0000319167 Malus x domestica MDP0000319167 N 0.754
MDP0000776183 Malus x domestica MDP0000776183 N 0.742
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.724
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.736
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.730
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.000
mgf011401m Mimulus guttatus mgf011401m N 0.000
mgf015234m Mimulus guttatus mgf015234m N 0.712
mgf015734m Mimulus guttatus mgf015734m N 0.739
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.000
PK00601.1 Cannabis sativa PK00601.1 N 0.749
PK01617.1 Cannabis sativa PK01617.1 N 0.731
PK21390.1 Cannabis sativa PK21390.1 N 0.737
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.732
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.719
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.752
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.722
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.759
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.719
ppa000626m Prunus persica ppa000626m N 0.760
ppa000627m Prunus persica ppa000627m N 0.736
ppa000731m Prunus persica ppa000731m N 0.741
SB03G039600 Sorghum bicolor Sb03g039600 N 0.745
SB04G037410 Sorghum bicolor Sb04g037410 N 0.722
SB09G001090 Sorghum bicolor Sb09g001090 N 0.736
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.000
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.000