amel4_ncbi_hmm2739 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm2739 T31899_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.885
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.856
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.856
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.856
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.856
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.856
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.856
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.856
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.856
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm2739 RRM 9 80
amel4_ncbi_hmm2739 RRM 159 225

Links

Other RRM family RBPs
Other Apis mellifera RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
105398 Helobdella robusta 105398 I 0.763
186191 Helobdella robusta 186191 I 0.712
AAEL002980 Aedes aegypti AAEL002980 I 0.892
AAEL014167 Aedes aegypti AAEL014167 I 0.892
AAH44979 Xenopus laevis AAH44979 I 0.842
AAH72799 Xenopus laevis AAH72799 I 0.806
AAH84107 Xenopus laevis AAH84107 I 0.777
AGAP011637 Anopheles gambiae AGAP011637 I 0.871
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.856
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.820
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.770
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.914
Bm1_37765 Brugia malayi Bm1_37765 I 0.719
CAA41021 Xenopus laevis CAA41021 I 0.842
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.871
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.871
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.856
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.813
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.842
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.856
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.820
SNRPA Canis familiaris ENSCAFG00000005091 I 0.856
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.820
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.835
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.820
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.763
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.842
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.741
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.777
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.820
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.856
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.784
snrpa Danio rerio ENSDARG00000018890 I 0.856
snrpb2 Danio rerio ENSDARG00000039424 I 0.770
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.856
LOC100068274 Equus caballus ENSECAG00000013141 I 0.856
LOC100050830 Equus caballus ENSECAG00000018407 I 0.820
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.856
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.763
SNRPA Echinops telfairi ENSETEG00000019205 I 0.820
SNRPA Felis catus ENSFCAG00000016209 I 0.856
SNRPA Homo sapiens ENSG00000077312 D 0.856
SNRPB2 Homo sapiens ENSG00000125870 I 0.820
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.827
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.770
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.827
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.856
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.820
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.820
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.763
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.748
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.734
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.827
SNRPA Microcebus murinus ENSMICG00000009766 I 0.727
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.820
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.856
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.813
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.820
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.856
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.799
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.863
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.820
Snrpa Mus musculus ENSMUSG00000061479 I 0.849
Gm5145 Mus musculus ENSMUSG00000071273 I 0.712
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.820
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.813
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.813
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.856
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.820
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.856
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.820
SNRPA Oryzias latipes ENSORLG00000006536 I 0.849
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.763
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.813
SNRPA Procavia capensis ENSPCAG00000012325 I 0.863
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.856
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.820
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.856
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.820
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.856
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.784
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.856
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.820
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.820
SNRPA Sus scrofa ENSSSCG00000002998 I 0.856
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.820
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.820
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.856
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.820
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.827
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.712
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.763
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.820
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.763
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.849
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.820
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.820
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.849
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.820
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.813
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.878
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.878
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.885
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.856
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.770
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.906
snf Drosophila melanogaster FBgn0003449 D 0.885
snf Drosophila mojavensis FBgn0069598 I 0.892
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.892
GF21334 Drosophila ananassae FBgn0098336 I 0.892
GG18748 Drosophila erecta FBgn0110957 I 0.885
GH24608 Drosophila grimshawi FBgn0132064 I 0.892
GL14287 Drosophila persimilis FBgn0151892 I 0.892
GM12396 Drosophila sechellia FBgn0167333 I 0.885
GJ16850 Drosophila virilis FBgn0204029 I 0.892
GK25839 Drosophila willistoni FBgn0227798 I 0.892
GE16390 Drosophila yakuba FBgn0233919 I 0.885
LOAG_02293 Loa loa LOAG_02293 I 0.719
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.986
P45429 Xenopus laevis P45429 I 0.842
Smp_069870 Schistosoma mansoni Smp_069870 I 0.707
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.856
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.719
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.734
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.734