CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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sf3b14
(
Danio rerio
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDARG00000009753
T36055_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000006812
RRM
21
88
LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLV
Links
Other
RRM
family RBPs
Other
Danio rerio
RBPs
143 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
18916_YNL110C
Saccharomyces paradoxus
18916_YNL110C
N
0.000
A7TR62_VANPO
Vanderwaltozyma polyspora
A7TR62_VANPO
N
0.000
AFL224W
Ashbya gossypii
AFL224W
N
0.000
CAGL0L03806g
Candida glabrata
CAGL0L03806g
N
0.000
KLLA0F23650g
Kluyveromyces lactis
KLLA0F23650g
N
0.000
KLTH0D09262g
Kluyveromyces thermotolerans
KLTH0D09262g
N
0.000
Kwal_8458
Kluyveromyces waltii
Kwal_8458
N
0.000
SAKL0E10604g
Lachancea kluyveri
SAKL0E10604g
N
0.000
Scas_Contig666.11
Saccharomyces castellii
Scas_Contig666.11
N
0.000
Skud_Contig1428.4
Saccharomyces kudriavzevii
Skud_Contig1428.4
N
0.000
NOP15
Saccharomyces cerevisiae
YNL110C
N
0.000
ZYRO0B09790g
Zygosaccharomyces rouxii
ZYRO0B09790g
N
0.000