SB05G025410 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb05g025410 T46008_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb05g025410.1 RRM 8 76
Sb05g025410.1 RRM 108 177

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000635 Ricinus communis 27613.m000635 N 0.748
29608.m000212 Ricinus communis 29608.m000212 N 0.727
30048.m000319 Ricinus communis 30048.m000319 N 0.741
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.705
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.779
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.727
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.727
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.719
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.748
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.727
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.707
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.712
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.719
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.712
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.705
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.712
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.734
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.705
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.727
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.712
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.719
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.712
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.705
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.734
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.748
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.800
MDP0000188788 Malus x domestica MDP0000188788 N 0.741
MDP0000204698 Malus x domestica MDP0000204698 N 0.741
MDP0000320618 Malus x domestica MDP0000320618 N 0.734
MDP0000609551 Malus x domestica MDP0000609551 N 0.741
MDP0000642684 Malus x domestica MDP0000642684 N 0.727
MDP0000907782 Malus x domestica MDP0000907782 N 0.727
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.712
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.712
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.727
mgf009385m Mimulus guttatus mgf009385m N 0.705
mgf012147m Mimulus guttatus mgf012147m N 0.705
PK13457.1 Cannabis sativa PK13457.1 N 0.727
PK25912.1 Cannabis sativa PK25912.1 N 0.734
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.727
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.705
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.741
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.734
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.702
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.734
ppa004834m Prunus persica ppa004834m N 0.748
ppa005119m Prunus persica ppa005119m N 0.741
ppa005122m Prunus persica ppa005122m N 0.748
ppa005132m Prunus persica ppa005132m N 0.741
SB02G005620 Sorghum bicolor Sb02g005620 N 0.719
SB02G005670 Sorghum bicolor Sb02g005670 N 0.719