CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SB05G025410
(
Sorghum bicolor
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Sb05g025410
T46008_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb05g025410.1
RRM
8
76
LFIGGISWDTNEDHLLKYFKKYGEVEEAIVMRDRATGRSRGFGFIMFADPAVAKHVIMEKHMIDGRMVE
Sb05g025410.1
RRM
108
177
IFVGGLASNVTKEDVIKHFKQFGTIIDVVVVYDHHTQRPRGFGFITYDSEDAVHRALIKTFQKLKGKMVE
Links
Other
RRM
family RBPs
Other
Sorghum bicolor
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.800
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.779
ppa005122m
Prunus persica
ppa005122m
N
0.748
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.748
27613.m000635
Ricinus communis
27613.m000635
N
0.748
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.748
ppa004834m
Prunus persica
ppa004834m
N
0.748
MDP0000609551
Malus x domestica
MDP0000609551
N
0.741
MDP0000204698
Malus x domestica
MDP0000204698
N
0.741
ppa005132m
Prunus persica
ppa005132m
N
0.741
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.741
ppa005119m
Prunus persica
ppa005119m
N
0.741
MDP0000188788
Malus x domestica
MDP0000188788
N
0.741
30048.m000319
Ricinus communis
30048.m000319
N
0.741
MDP0000320618
Malus x domestica
MDP0000320618
N
0.734
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.734
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.734
PK25912.1
Cannabis sativa
PK25912.1
N
0.734
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.734
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.734
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.727
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.727
MDP0000907782
Malus x domestica
MDP0000907782
N
0.727
MDP0000642684
Malus x domestica
MDP0000642684
N
0.727
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.727
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.727
PK13457.1
Cannabis sativa
PK13457.1
N
0.727
29608.m000212
Ricinus communis
29608.m000212
N
0.727
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.727
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.727
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.719
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.719
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.719
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.719
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.719
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.712
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.712
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.712
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.712
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.712
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.712
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.712
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.707
mgf009385m
Mimulus guttatus
mgf009385m
N
0.705
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.705
mgf012147m
Mimulus guttatus
mgf012147m
N
0.705
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.705
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.705
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.705
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.705
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.702