Cucsa.120420 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.120420 T49562_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.120420.1 RRM 8 76
Cucsa.120420.1 RRM 108 177
Cucsa.120420.2 RRM 8 76
Cucsa.120420.2 RRM 108 177

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.878
ppa005119m Prunus persica ppa005119m N 0.871
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.871
ppa005132m Prunus persica ppa005132m N 0.871
MDP0000907782 Malus x domestica MDP0000907782 N 0.863
MDP0000320618 Malus x domestica MDP0000320618 N 0.863
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.863
PK13457.1 Cannabis sativa PK13457.1 N 0.856
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.856
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.856
mgf009385m Mimulus guttatus mgf009385m N 0.856
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.849
MDP0000642684 Malus x domestica MDP0000642684 N 0.849
PK25912.1 Cannabis sativa PK25912.1 N 0.842
29608.m000212 Ricinus communis 29608.m000212 N 0.842
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.842
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.842
30048.m000319 Ricinus communis 30048.m000319 N 0.842
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.837
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.835
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.835
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.835
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.835
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.835
ppa004834m Prunus persica ppa004834m N 0.835
ppa005122m Prunus persica ppa005122m N 0.835
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.829
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.829
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.829
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.827
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.827
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.827
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.827
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.827
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.827
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.827
MDP0000188788 Malus x domestica MDP0000188788 N 0.827
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.827
MDP0000204698 Malus x domestica MDP0000204698 N 0.827
MDP0000609551 Malus x domestica MDP0000609551 N 0.827
mgf009486m Mimulus guttatus mgf009486m N 0.821
mgf012147m Mimulus guttatus mgf012147m N 0.820
27613.m000635 Ricinus communis 27613.m000635 N 0.820
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.820
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.820
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.820
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.820
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.820
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.820
mgf004139m Mimulus guttatus mgf004139m N 0.820
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.813
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.806
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.799
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.791
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.791
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.791
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.791
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.784
SB02G037690 Sorghum bicolor Sb02g037690 N 0.777
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.777
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.777
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.777
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.777
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.770
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.770
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.763
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.763
SB02G005620 Sorghum bicolor Sb02g005620 N 0.763
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.763
SB02G005670 Sorghum bicolor Sb02g005670 N 0.763
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.748
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.727
SB05G025410 Sorghum bicolor Sb05g025410 N 0.712
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.712
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.709