chr6.LjT11E14.110.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr6.LjT11E14.110.nc T55914_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr6.LjT11E14.110.nc RRM 8 76
chr6.LjT11E14.110.nc RRM 108 176

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.921
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.921
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.921
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.914
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.907
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.906
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.906
PK25912.1 Cannabis sativa PK25912.1 N 0.892
ppa005122m Prunus persica ppa005122m N 0.885
ppa004834m Prunus persica ppa004834m N 0.885
MDP0000188788 Malus x domestica MDP0000188788 N 0.878
MDP0000609551 Malus x domestica MDP0000609551 N 0.878
MDP0000204698 Malus x domestica MDP0000204698 N 0.878
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.863
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.863
29608.m000212 Ricinus communis 29608.m000212 N 0.856
ppa005132m Prunus persica ppa005132m N 0.856
ppa005119m Prunus persica ppa005119m N 0.856
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.856
27613.m000635 Ricinus communis 27613.m000635 N 0.856
30048.m000319 Ricinus communis 30048.m000319 N 0.856
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.849
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.849
MDP0000320618 Malus x domestica MDP0000320618 N 0.849
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.849
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.849
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.842
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.842
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.842
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.842
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.842
MDP0000907782 Malus x domestica MDP0000907782 N 0.842
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.836
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.835
MDP0000642684 Malus x domestica MDP0000642684 N 0.835
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.835
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.835
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.833
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.829
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.827
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.827
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.827
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.827
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.827
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.827
mgf012147m Mimulus guttatus mgf012147m N 0.827
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.820
mgf009385m Mimulus guttatus mgf009385m N 0.820
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.813
PK13457.1 Cannabis sativa PK13457.1 N 0.813
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.809
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.806
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.799
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.799
SB02G005670 Sorghum bicolor Sb02g005670 N 0.791
SB02G005620 Sorghum bicolor Sb02g005620 N 0.791
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.791
mgf004139m Mimulus guttatus mgf004139m N 0.784
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.784
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.777
SB02G037690 Sorghum bicolor Sb02g037690 N 0.777
mgf009486m Mimulus guttatus mgf009486m N 0.771
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.770
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.770
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.763
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.763
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.763
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.755
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.755
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.755
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.741
SB05G025410 Sorghum bicolor Sb05g025410 N 0.712
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.709