CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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chr6.LjT11E14.110.nc
(
Lotus japonicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
chr6.LjT11E14.110.nc
T55914_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr6.LjT11E14.110.nc
RRM
8
76
LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDKHIIDGRTVE
chr6.LjT11E14.110.nc
RRM
108
176
IFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV
Links
Other
RRM
family RBPs
Other
Lotus japonicus
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.921
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.921
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.921
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.914
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.907
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.906
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.906
PK25912.1
Cannabis sativa
PK25912.1
N
0.892
ppa005122m
Prunus persica
ppa005122m
N
0.885
ppa004834m
Prunus persica
ppa004834m
N
0.885
MDP0000188788
Malus x domestica
MDP0000188788
N
0.878
MDP0000609551
Malus x domestica
MDP0000609551
N
0.878
MDP0000204698
Malus x domestica
MDP0000204698
N
0.878
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.863
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.863
29608.m000212
Ricinus communis
29608.m000212
N
0.856
ppa005132m
Prunus persica
ppa005132m
N
0.856
ppa005119m
Prunus persica
ppa005119m
N
0.856
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.856
27613.m000635
Ricinus communis
27613.m000635
N
0.856
30048.m000319
Ricinus communis
30048.m000319
N
0.856
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.849
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.849
MDP0000320618
Malus x domestica
MDP0000320618
N
0.849
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.849
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.849
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.842
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.842
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.842
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.842
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.842
MDP0000907782
Malus x domestica
MDP0000907782
N
0.842
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.836
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.835
MDP0000642684
Malus x domestica
MDP0000642684
N
0.835
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.835
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.835
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.833
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.829
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.827
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.827
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.827
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.827
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.827
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.827
mgf012147m
Mimulus guttatus
mgf012147m
N
0.827
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.820
mgf009385m
Mimulus guttatus
mgf009385m
N
0.820
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.813
PK13457.1
Cannabis sativa
PK13457.1
N
0.813
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.809
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.806
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.799
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.799
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.791
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.791
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.791
mgf004139m
Mimulus guttatus
mgf004139m
N
0.784
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.784
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.777
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.777
mgf009486m
Mimulus guttatus
mgf009486m
N
0.771
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.770
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.770
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.763
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.763
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.763
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.755
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.755
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.755
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.741
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.712
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.709