cassava14774.m1 (Manihot esculenta)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		cassava14774.m1 T00187_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava14774.m1 CCCH ZF 17 34
cassava14774.m1 CCCH ZF 76 101
cassava14774.m1 KH 145 207
cassava14774.m1 CCCH ZF 236 261

Links

Other CCCH ZF,KH family RBPs
Other Manihot esculenta RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009316m Prunus persica ppa009316m N 0.843
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.739
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.729
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.711
mgf010445m Mimulus guttatus mgf010445m N 0.750
mgf003025m Mimulus guttatus mgf003025m N 0.721
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.793
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.843
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.793
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.843
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.702
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.713
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.789
ppa009199m Prunus persica ppa009199m N 0.786
MDP0000275117 Malus x domestica MDP0000275117 N 0.789
MDP0000217837 Malus x domestica MDP0000217837 N 0.779
MDP0000202971 Malus x domestica MDP0000202971 N 0.850
MDP0000176924 Malus x domestica MDP0000176924 N 0.850
MDP0000130160 Malus x domestica MDP0000130160 N 0.789
MDP0000120315 Malus x domestica MDP0000120315 N 0.789
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.829
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.796
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.843
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.836
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.768
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.725
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.745
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.739
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.745
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.727
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.725
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.748
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.769
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.768
SB04G006450 Sorghum bicolor Sb04g006450 N 0.736
SB06G032000 Sorghum bicolor Sb06g032000 N 0.716
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.745
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.807
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.814
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.707
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.879
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.794
27843.m000162 Ricinus communis 27843.m000162 N 0.893
27843.m000161 Ricinus communis 27843.m000161 N 0.900
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.739
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.739