ppa000731m (Prunus persica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ppa000731m T25241_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa000731m PUF 686 720
ppa000731m PUF 722 756
ppa000731m PUF 758 792
ppa000731m PUF 794 828
ppa000731m PUF 830 864
ppa000731m PUF 868 901
ppa000731m PUF 903 937
ppa000731m PUF 950 979

Links

Other PUF family RBPs
Other Prunus persica RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.776
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.776
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.773
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.776
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.780
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.899
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.769
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.768
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.772
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.741
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.757
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.909
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.783
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.764
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.920
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.768
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.772
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.887
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.790
ppa000627m Prunus persica ppa000627m N 0.772
ppa000626m Prunus persica ppa000626m N 0.801
MDP0000776183 Malus x domestica MDP0000776183 N 0.791
MDP0000319167 Malus x domestica MDP0000319167 N 0.775
MDP0000314338 Malus x domestica MDP0000314338 N 0.801
MDP0000176743 Malus x domestica MDP0000176743 N 0.909
MDP0000119814 Malus x domestica MDP0000119814 N 0.876
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.761
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.775
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.884
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.800
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.774
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.763
mgf015734m Mimulus guttatus mgf015734m N 0.775
mgf015234m Mimulus guttatus mgf015234m N 0.764
mgf011401m Mimulus guttatus mgf011401m N 0.833
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.768
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.786
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.765
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.783
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.823
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.895
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.754
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.746
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.807
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.774
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.774
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.775
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.768
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.836
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.754
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.757
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.750
PK21390.1 Cannabis sativa PK21390.1 N 0.772
PK01617.1 Cannabis sativa PK01617.1 N 0.899
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.801
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.768
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.811
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.801
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.891
30143.m001164 Ricinus communis 30143.m001164 N 0.798
30143.m001162 Ricinus communis 30143.m001162 N 0.762
29595.m000292 Ricinus communis 29595.m000292 N 0.902
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.746
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.829
SB09G001090 Sorghum bicolor Sb09g001090 N 0.767
SB03G039600 Sorghum bicolor Sb03g039600 N 0.804
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.862
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.808
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.750
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.797
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.884
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.758
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.775
PK00601.1 Cannabis sativa PK00601.1 N 0.794