SNRPA (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000002998 T41404_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M069_0.6
Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071
1.000
SNRPA
M348_0.6
Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314
1.000
SNRPA
M347_0.6
Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314
1.000
SNRPA
M346_0.6
Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314
1.000
SNRPA
M345_0.6
Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314
1.000
SNRPA
M319_0.6
Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938
1.000
SNRPA
M318_0.6
Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938
1.000
SNRPA
M317_0.6
Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938
1.000
snf
M136_0.6
Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145
0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000003248 RRM 18 89
ENSSSCP00000003248 RRM 216 281

Links

Other RRM family RBPs
Other Sus scrofa RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity
Action
PPARGC1B Choloepus hoffmanni ENSCHOG00000005517 N 0.000
PPARGC1B Myotis lucifugus ENSMLUG00000013169 N 0.000