XM_002891485.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_104684.1 T46100_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_104684.1 RRM 41 111
scaffold_104684.1 RRM 129 198
scaffold_104684.1 RRM 220 289
scaffold_104684.1 RRM 323 392

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa002620m Prunus persica ppa002620m N 0.730
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.000
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.754
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.747
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.776
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.000
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.000
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.779
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.719
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.712
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.705
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.701
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.776
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.765
mgf004596m Mimulus guttatus mgf004596m N 0.000
mgf004973m Mimulus guttatus mgf004973m N 0.715
mgf005294m Mimulus guttatus mgf005294m N 0.737
ppa002618m Prunus persica ppa002618m N 0.730
ppa002607m Prunus persica ppa002607m N 0.786
MDP0000497543 Malus x domestica MDP0000497543 N 0.786
MDP0000283985 Malus x domestica MDP0000283985 N 0.730
MDP0000253709 Malus x domestica MDP0000253709 N 0.790
MDP0000156895 Malus x domestica MDP0000156895 N 0.790
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.000
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.790
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.705
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.000
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.000
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.701
mgf009542m Mimulus guttatus mgf009542m N 0.733
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.772
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.000
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.758
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.000
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.776
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.000
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.000
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.000
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.715
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.706
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.705
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.733
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.000
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.986
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.744
PK02172.1 Cannabis sativa PK02172.1 N 0.783
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.740
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.705
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.706
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.754
30170.m013847 Ricinus communis 30170.m013847 N 0.754
29801.m003152 Ricinus communis 29801.m003152 N 0.772
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.000
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.769
SB06G021850 Sorghum bicolor Sb06g021850 N 0.000
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.000
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.744
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.772
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.754
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.783
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.715
PK00659.1 Cannabis sativa PK00659.1 N 0.769