estExt_Genewise1Plus.C_1950032 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_1950032 T51408_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.870
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.870
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.870
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.870
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.870
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.870
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.870
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.870
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.855
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_1950032 RRM 9 80
estExt_Genewise1Plus.C_1950032 RRM 146 210

Links

Other RRM family RBPs
Other Capitella teleta RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
snf Drosophila melanogaster FBgn0003449 D 0.855
SNRPA Homo sapiens ENSG00000077312 D 0.870
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.870
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.813
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.870
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.813
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.820
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.717
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.788
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.833
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.788
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.848
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.813
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.813
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.855
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.813
SNRPA Sus scrofa ENSSSCG00000002998 I 0.870
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.813
SNRPA Oryzias latipes ENSORLG00000006536 I 0.861
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.766
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.806
SNRPA Procavia capensis ENSPCAG00000012325 I 0.870
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.870
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.813
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.870
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.813
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.870
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.777
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.870
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.813
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.813
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.813
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.813
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.905
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.905
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.854
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.870
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.870
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.813
Smp_069870 Schistosoma mansoni Smp_069870 I 0.721
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.741
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.741
AAH44979 Xenopus laevis AAH44979 I 0.848
AAH72799 Xenopus laevis AAH72799 I 0.806
AAH84107 Xenopus laevis AAH84107 I 0.804
CAA41021 Xenopus laevis CAA41021 I 0.848
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.906
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.810
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.898
snf Drosophila mojavensis FBgn0069598 I 0.862
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.855
GF21334 Drosophila ananassae FBgn0098336 I 0.855
GG18748 Drosophila erecta FBgn0110957 I 0.855
GH24608 Drosophila grimshawi FBgn0132064 I 0.862
GL14287 Drosophila persimilis FBgn0151892 I 0.855
GM12396 Drosophila sechellia FBgn0167333 I 0.855
GJ16850 Drosophila virilis FBgn0204029 I 0.862
GK25839 Drosophila willistoni FBgn0227798 I 0.862
GE16390 Drosophila yakuba FBgn0233919 I 0.855
105398 Helobdella robusta 105398 I 0.818
186191 Helobdella robusta 186191 I 0.730
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.770
P45429 Xenopus laevis P45429 I 0.848
Bm1_37765 Brugia malayi Bm1_37765 I 0.737
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.833
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.813
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.775
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.855
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.739
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.803
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.813
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.870
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.796
snrpa Danio rerio ENSDARG00000018890 I 0.855
snrpb2 Danio rerio ENSDARG00000039424 I 0.803
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.870
LOC100068274 Equus caballus ENSECAG00000013141 I 0.870
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.813
SNRPA Canis familiaris ENSCAFG00000005091 I 0.870
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.813
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.848
LOAG_02293 Loa loa LOAG_02293 I 0.737
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.737
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.885
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.833
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.899
AAEL002980 Aedes aegypti AAEL002980 I 0.855
AAEL014167 Aedes aegypti AAEL014167 I 0.855
AGAP011637 Anopheles gambiae AGAP011637 I 0.848
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.848
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.806
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.855
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.870
LOC100050830 Equus caballus ENSECAG00000018407 I 0.813
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.862
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.870
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.806
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.813
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.870
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.791
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.877
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.813
Snrpa Mus musculus ENSMUSG00000061479 I 0.855
Gm5145 Mus musculus ENSMUSG00000071273 I 0.703
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.813
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.806
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.819
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.870
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.813
SNRPA Microcebus murinus ENSMICG00000009766 I 0.732
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.820
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.775
SNRPA Echinops telfairi ENSETEG00000019205 I 0.826
SNRPA Felis catus ENSFCAG00000016209 I 0.870
SNRPB2 Homo sapiens ENSG00000125870 I 0.813
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.847
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.788
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.820
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.870
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.813
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.813
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.761
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.761
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.727
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.813