B9HNZ4_POPTR (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0009s05520 T00755_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s05520.1 CCCH ZF 269 291
POPTR_0009s05520.1 RRM 406 466

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29223.m000023 Ricinus communis 29223.m000023 N 0.718
30169.m006471 Ricinus communis 30169.m006471 N 0.905
30169.m006472 Ricinus communis 30169.m006472 N 0.779
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.816
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.738
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.940
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.756
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.845
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.713
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.857
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.845
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.833
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.810
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.821
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.869
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.874
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.767
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.905
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.905
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.738
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.736
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.833
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.833
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.833
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.833
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.779
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.869
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.802
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.726
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.738
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.726
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.702
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.782
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.857
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.857
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.782
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.857
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.857
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.845
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.821
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.845
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.750
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.833
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.786
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.845
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.857
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.869
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.857
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.857
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.845
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.833
MDP0000120231 Malus x domestica MDP0000120231 N 0.881
MDP0000120462 Malus x domestica MDP0000120462 N 0.869
MDP0000164538 Malus x domestica MDP0000164538 N 0.802
MDP0000214614 Malus x domestica MDP0000214614 N 0.706
MDP0000220601 Malus x domestica MDP0000220601 N 0.821
MDP0000243086 Malus x domestica MDP0000243086 N 0.845
MDP0000256775 Malus x domestica MDP0000256775 N 0.798
MDP0000259773 Malus x domestica MDP0000259773 N 0.798
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.845
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.793
mgf000973m Mimulus guttatus mgf000973m N 0.788
mgf002273m Mimulus guttatus mgf002273m N 0.812
mgf014647m Mimulus guttatus mgf014647m N 0.833
PK18074.1 Cannabis sativa PK18074.1 N 0.767
PK20504.1 Cannabis sativa PK20504.1 N 0.706
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.833
ppa002383m Prunus persica ppa002383m N 0.791
ppa002413m Prunus persica ppa002413m N 0.869
ppa003564m Prunus persica ppa003564m N 0.706
ppa019338m Prunus persica ppa019338m N 0.701
ppa023263m Prunus persica ppa023263m N 0.869
SB01G036490 Sorghum bicolor Sb01g036490 N 0.845
SB02G043180 Sorghum bicolor Sb02g043180 N 0.833
SB05G001540 Sorghum bicolor Sb05g001540 N 0.774
SB08G001980 Sorghum bicolor Sb08g001980 N 0.821
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.759
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.738
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.816