LOC100403904 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000016581 T16784_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.972
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.958
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.958
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.958
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.931
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.931
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000030517 CSD 100 170

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

202 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.000
ENSCPOG00000012917 Cavia porcellus ENSCPOG00000012917 N 0.000
ENSEEUG00000002701 Erinaceus europaeus ENSEEUG00000002701 N 0.000
ENSETEG00000002793 Echinops telfairi ENSETEG00000002793 N 0.000
ENSMGAG00000005408 Meleagris gallopavo ENSMGAG00000005408 N 0.000
ENSMGAG00000012239 Meleagris gallopavo ENSMGAG00000012239 N 0.000
ENSSARG00000004448 Sorex araneus ENSSARG00000004448 N 0.000
ENSSTOG00000016395 Spermophilus tridecemlineatus ENSSTOG00000016395 N 0.000
ENSVPAG00000003865 Vicugna pacos ENSVPAG00000003865 N 0.000
Pabpc1 Dipodomys ordii ENSDORG00000013935 N 0.000
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.000
PABPC4 Pteropus vampyrus ENSPVAG00000002187 N 0.000
PABPC4 Sorex araneus ENSSARG00000000310 N 0.000
PABPC4 Choloepus hoffmanni ENSCHOG00000005327 N 0.000
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.000
Q5ZL53_CHICK Gallus gallus ENSGALG00000014450 N 0.000