CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100403904
(
Callithrix jacchus
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSCJAG00000016581
T16784_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
YBX2
M082_0.6
Homo sapiens
AACAWCD
RNAcompete
Ray et al.(2013)
RNCMPT00084
0.972
ybx2-a
M260_0.6
Xenopus laevis
GCCANACCAYCGC
SELEX
Cook et al.(2011)
130_11376140
0.958
ybx2-a
M254_0.6
Xenopus laevis
KAACAUCU
SELEX
Cook et al.(2011)
115_7499328
0.958
ybx2-a
M250_0.6
Xenopus laevis
UAACAUC
SELEX
Cook et al.(2011)
114_7499328
0.958
YB-1
M111_0.6
Homo sapiens
AACAUCD
RNAcompete
Ray et al.(2013)
RNCMPT00116
0.931
YB-1
M081_0.6
Homo sapiens
AACAUC
RNAcompete
Ray et al.(2013)
RNCMPT00083
0.931
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000030517
CSD
100
170
RVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGP
Links
Other
CSD
family RBPs
Other
Callithrix jacchus
RBPs
202 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.000
ENSCPOG00000012917
Cavia porcellus
ENSCPOG00000012917
N
0.000
ENSEEUG00000002701
Erinaceus europaeus
ENSEEUG00000002701
N
0.000
ENSETEG00000002793
Echinops telfairi
ENSETEG00000002793
N
0.000
ENSMGAG00000005408
Meleagris gallopavo
ENSMGAG00000005408
N
0.000
ENSMGAG00000012239
Meleagris gallopavo
ENSMGAG00000012239
N
0.000
ENSSARG00000004448
Sorex araneus
ENSSARG00000004448
N
0.000
ENSSTOG00000016395
Spermophilus tridecemlineatus
ENSSTOG00000016395
N
0.000
ENSVPAG00000003865
Vicugna pacos
ENSVPAG00000003865
N
0.000
Pabpc1
Dipodomys ordii
ENSDORG00000013935
N
0.000
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.000
PABPC4
Pteropus vampyrus
ENSPVAG00000002187
N
0.000
PABPC4
Sorex araneus
ENSSARG00000000310
N
0.000
PABPC4
Choloepus hoffmanni
ENSCHOG00000005327
N
0.000
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.000
Q5ZL53_CHICK
Gallus gallus
ENSGALG00000014450
N
0.000