LOC100408015 (Callithrix jacchus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSCJAG00000001903 T18524_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		1.000
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.883
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.883
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.862
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.862
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000003462 KH 15 75
ENSCJAP00000003462 KH 99 162
ENSCJAP00000003462 KH 263 325
ENSCJAP00000003474 KH 58 120
ENSCJAP00000003487 KH 44 104
ENSCJAP00000003487 KH 128 191
ENSCJAP00000003487 KH 292 354

Links

Other KH family RBPs
Other Callithrix jacchus RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.742
AAH41241 Xenopus laevis AAH41241 I 0.878
AAH84195 Xenopus laevis AAH84195 I 0.878
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.862
CAB50743 Xenopus laevis CAB50743 I 0.878
CAD29864 Xenopus laevis CAD29864 I 0.878
D3ZWQ9_RAT Rattus norvegicus ENSRNOG00000038946 N 0.000
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.883
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.957
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.878
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.883
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.795
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.862
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.883
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.915
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.883
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.883
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.867
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.856
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.851
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.883
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.862
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.742
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.862
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.851
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.779
LOC100050101 Equus caballus ENSECAG00000012413 I 1.000
LOC100050579 Equus caballus ENSECAG00000002544 I 0.862
LOC100060660 Equus caballus ENSECAG00000024218 I 0.742
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.872
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.862
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.862
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.862
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.856
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.862
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.862
PCBP1 Homo sapiens ENSG00000169564 D 0.862
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.862
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.862
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.862
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.883
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.883
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.883
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.883
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.883
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.883
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.883
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.883
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.883
pcbp2 Danio rerio ENSDARG00000013184 D 0.883
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.883
PCBP2 Equus caballus ENSECAG00000022389 I 0.883
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.883
PCBP2 Homo sapiens ENSG00000197111 D 0.883
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.883
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.968
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.973
PCBP3 Homo sapiens ENSG00000183570 I 1.000
PCBP3 Pan troglodytes ENSPTRG00000014010 I 1.000
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.931
PCBP3 Cavia porcellus ENSCPOG00000003648 I 1.000
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 1.000
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.979
PCBP3 Gallus gallus ENSGALG00000004394 I 0.957
PCBP3 Gallus gallus ENSGALG00000013155 I 0.963
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 1.000
PCBP3 Anolis carolinensis ENSACAG00000004607 I 1.000
Pcbp3 Mus musculus ENSMUSG00000001120 D 1.000
PCBP3 Macaca mulatta ENSMMUG00000003825 I 1.000
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.878
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.979
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 1.000
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 1.000
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.952
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 1.000
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.979
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.963
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.742
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.772
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.774
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.783
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.747
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.758
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.711
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.742
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.758
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.742
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.742
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.730
PCBP4 Loxodonta africana ENSLAFG00000010732 N 0.000
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.772
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.742
PCBP4 Homo sapiens ENSG00000090097 I 0.742
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.742
Pcbp4 Dipodomys ordii ENSDORG00000000573 N 0.000
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.742
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.989
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.883