SNRPA (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000010875 T35829_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		1.000
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		1.000
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		1.000
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		1.000
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		1.000
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		1.000
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		1.000
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		1.000
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000009769 RRM 18 89
ENSCPOP00000009769 RRM 216 281

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
105398 Helobdella robusta 105398 I 0.761
186191 Helobdella robusta 186191 I 0.725
AAEL002980 Aedes aegypti AAEL002980 I 0.848
AAEL014167 Aedes aegypti AAEL014167 I 0.848
AAH44979 Xenopus laevis AAH44979 I 0.957
AAH72799 Xenopus laevis AAH72799 I 0.784
AAH84107 Xenopus laevis AAH84107 I 0.797
AGAP011637 Anopheles gambiae AGAP011637 I 0.848
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.856
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 1.000
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.791
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.712
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.848
Bm1_37765 Brugia malayi Bm1_37765 I 0.710
CAA41021 Xenopus laevis CAA41021 I 0.957
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.833
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.833
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.790
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.819
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.906
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.768
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 1.000
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 1.000
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.791
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.855
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.855
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.870
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.833
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.775
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.884
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.833
GE16390 Drosophila yakuba FBgn0233919 I 0.833
GF21334 Drosophila ananassae FBgn0098336 I 0.833
GG18748 Drosophila erecta FBgn0110957 I 0.833
GH24608 Drosophila grimshawi FBgn0132064 I 0.841
GJ16850 Drosophila virilis FBgn0204029 I 0.841
GK25839 Drosophila willistoni FBgn0227798 I 0.841
GL14287 Drosophila persimilis FBgn0151892 I 0.833
GM12396 Drosophila sechellia FBgn0167333 I 0.833
Gm5145 Mus musculus ENSMUSG00000071273 I 0.833
LOAG_02293 Loa loa LOAG_02293 I 0.710
LOC100050830 Equus caballus ENSECAG00000018407 I 0.791
LOC100068274 Equus caballus ENSECAG00000013141 I 1.000
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.739
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.768
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.791
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.978
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.791
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.871
P45429 Xenopus laevis P45429 I 0.957
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.791
Smp_069870 Schistosoma mansoni Smp_069870 I 0.707
snf Drosophila melanogaster FBgn0003449 D 0.833
snf Drosophila mojavensis FBgn0069598 I 0.841
SNRPA Pan troglodytes ENSPTRG00000011007 I 1.000
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 1.000
Snrpa Rattus norvegicus ENSRNOG00000001501 I 1.000
SNRPA Tupaia belangeri ENSTBEG00000012717 I 1.000
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.942
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.949
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.986
snrpa Xenopus tropicalis ENSXETG00000002585 N 0.703
SNRPA Canis familiaris ENSCAFG00000005091 I 1.000
SNRPA Procavia capensis ENSPCAG00000012325 I 0.993
SNRPA Oryzias latipes ENSORLG00000006536 I 0.928
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.949
SNRPA Homo sapiens ENSG00000077312 D 1.000
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.942
Snrpa Mus musculus ENSMUSG00000061479 I 0.978
SNRPA Gorilla gorilla ENSGGOG00000001190 I 1.000
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.870
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.993
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.884
SNRPA Macaca mulatta ENSMMUG00000022024 I 1.000
SNRPA Microcebus murinus ENSMICG00000009766 I 0.848
SNRPA Myotis lucifugus ENSMLUG00000000219 I 1.000
SNRPA Felis catus ENSFCAG00000016209 I 1.000
SNRPA Echinops telfairi ENSETEG00000019205 I 0.928
SNRPA Sus scrofa ENSSSCG00000002998 I 1.000
snrpa Danio rerio ENSDARG00000018890 I 0.949
SNRPA Ochotona princeps ENSOPRG00000002364 I 1.000
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.978
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.986
SNRPA Otolemur garnettii ENSOGAG00000002864 I 1.000
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 1.000
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.799
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.784
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.705
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.791
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.791
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.791
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.791
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.739
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.799
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.754
snrpb2 Danio rerio ENSDARG00000039424 I 0.768
SNRPB2 Homo sapiens ENSG00000125870 I 0.791
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.746
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.784
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.791
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.791
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.791
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.791
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.784
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.755
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.791
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.791
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.791
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.784
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.791
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.791
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.791
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.791
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.770
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.791
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.791
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.791
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.761
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.761
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.799
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.791
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.841
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.710
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.712
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.712