SNRPA (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000010875 T35829_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		1.000
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		1.000
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		1.000
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		1.000
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		1.000
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		1.000
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		1.000
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		1.000
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000009769 RRM 18 89
ENSCPOP00000009769 RRM 216 281

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACH69785 Xenopus laevis ACH69785 I 0.000
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.000
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.000
BRUNOL5 Homo sapiens ENSG00000161082 D 0.000
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.000
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.000
CELF3 Microcebus murinus ENSMICG00000010644 N 0.000
CELF3 Homo sapiens ENSG00000159409 I 0.000
celf4 Danio rerio ENSDARG00000070045 I 0.000
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.000
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.000
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.000
Celf4 Mus musculus ENSMUSG00000024268 I 0.000
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.000
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.000
CELF5 Echinops telfairi ENSETEG00000016221 I 0.000
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.000
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.000
CELF5 Canis familiaris ENSCAFG00000019263 I 0.000
CELF5 Procavia capensis ENSPCAG00000002170 I 0.000
CELF5 Oryzias latipes ENSORLG00000004600 I 0.000
CELF5 Equus caballus ENSECAG00000018055 N 0.000
CELF5 Loxodonta africana ENSLAFG00000026387 N 0.000
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.000
Celf5 Dipodomys ordii ENSDORG00000005915 I 0.000
CELF5 Myotis lucifugus ENSMLUG00000006471 N 0.000
celf5 Danio rerio ENSDARG00000071375 I 0.000
CELF5 Otolemur garnettii ENSOGAG00000014161 I 0.000
CELF5 Bos taurus ENSBTAG00000021774 I 0.000
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.000