SFRS5 (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000011425 T41960_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.736
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.736
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.729
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.729
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000011783 RRM 6 68
ENSTGUP00000011783 RRM 109 174

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62194 Helobdella robusta 62194 I 0.713
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.992
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.992
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.744
AAH44085 Xenopus laevis AAH44085 I 0.783
AAH44265 Xenopus laevis AAH44265 I 0.713
AAH46668 Xenopus laevis AAH46668 I 0.729
AAH71160 Xenopus laevis AAH71160 I 0.791
AGAP004592 Anopheles gambiae AGAP004592 I 0.713
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.713
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.992
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.744
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.705
B52 Drosophila melanogaster FBgn0004587 D 0.736
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.705
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.729
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.729
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.806
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.713
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.713
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.705
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.829
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.752
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.744
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.992
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.736
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.721
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.736
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.783
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.729
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.721
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.736
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.729
GF17608 Drosophila ananassae FBgn0094626 I 0.736
GH18528 Drosophila grimshawi FBgn0125995 I 0.729
GI22065 Drosophila mojavensis FBgn0144794 I 0.729
GJ24113 Drosophila virilis FBgn0211197 I 0.729
GK13948 Drosophila willistoni FBgn0215954 I 0.736
GL23543 Drosophila persimilis FBgn0161133 I 0.729
ISCW010321 Ixodes scapularis ISCW010321 I 0.705
LOC100053264 Equus caballus ENSECAG00000026873 I 0.992
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.744
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.705
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.705
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.798
PHUM290500 Pediculus humanus PHUM290500 I 0.721
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.752
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.977
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.744
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.992
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.736
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.736
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.744
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.736
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.744
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.736
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.744
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.736
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.736
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.744
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.736
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.744
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.744
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.744
Srsf4 Mus musculus ENSMUSG00000028911 I 0.744
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.744
SRSF4 Homo sapiens ENSG00000116350 I 0.744
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.744
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.744
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.744
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.744
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.744
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.729
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.713
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.744
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.744
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.744
SRSF5 Sorex araneus ENSSARG00000001059 I 0.876
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.984
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.992
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.961
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.930
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.992
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.992
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.930
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.984
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.992
SRSF5 Meleagris gallopavo ENSMGAG00000011835 N 0.721
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.946
Srsf5 Mus musculus ENSMUSG00000021134 I 0.992
SRSF5 Monodelphis domestica ENSMODG00000011362 I 1.000
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.992
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.992
Srsf5 Dipodomys ordii ENSDORG00000003989 I 0.806
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.899
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.984
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.992
SRSF5 Felis catus ENSFCAG00000008848 I 0.992
SRSF5 Gasterosteus aculeatus ENSGACG00000007834 I 0.845
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.992
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.992
SRSF5 Pteropus vampyrus ENSPVAG00000009828 I 0.868
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.992
SRSF5 Anolis carolinensis ENSACAG00000005143 I 1.000
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.992
SRSF5 Procavia capensis ENSPCAG00000004405 N 0.736
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.992
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.822
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.992
SRSF5 Homo sapiens ENSG00000100650 D 0.992
srsf5a Danio rerio ENSDARG00000029818 I 0.806
srsf5b Danio rerio ENSDARG00000027734 I 0.938
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.705
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.721
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.736
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.736
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.729
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.736
SRSF6 Homo sapiens ENSG00000124193 I 0.736
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.744
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.729
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.729
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.713
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.736
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.721
Srsf6 Mus musculus ENSMUSG00000016921 I 0.736
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.729
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.736
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.729
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.729
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.729
srsf6a Danio rerio ENSDARG00000013729 I 0.729
srsf6b Danio rerio ENSDARG00000016783 I 0.713
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.791
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.767
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.767
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.767