SFRS5 (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000011425 T41960_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.736
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.736
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.729
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.729
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000011783 RRM 6 68
ENSTGUP00000011783 RRM 109 174

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI28969 Xenopus laevis AAI28969 N 0.000
Ame_R013924 Ailuropoda melanoleuca Ame_R013924 N 0.000
ENSEEUG00000007416 Erinaceus europaeus ENSEEUG00000007416 N 0.000
ENSMLUG00000003971 Myotis lucifugus ENSMLUG00000003971 N 0.000
ENSMLUG00000011039 Myotis lucifugus ENSMLUG00000011039 N 0.000
ENSPPYG00000003147 Pongo pygmaeus ENSPPYG00000003147 N 0.000
LOC100063883 Equus caballus ENSECAG00000021465 N 0.000
LOC100398629 Callithrix jacchus ENSCJAG00000018688 N 0.000
POLR2G Oryctolagus cuniculus ENSOCUG00000009485 N 0.000
POLR2G Oryzias latipes ENSORLG00000003154 N 0.000
POLR2G Procavia capensis ENSPCAG00000016408 N 0.000
POLR2G Ochotona princeps ENSOPRG00000014769 N 0.000
POLR2G Pan troglodytes ENSPTRG00000003786 N 0.000
POLR2G Pteropus vampyrus ENSPVAG00000003481 N 0.000
Polr2g Rattus norvegicus ENSRNOG00000019439 N 0.000
POLR2G Takifugu rubripes ENSTRUG00000002492 N 0.000
POLR2G Tursiops truncatus ENSTTRG00000002478 N 0.000
POLR2G Vicugna pacos ENSVPAG00000009534 N 0.000
polr2g Xenopus tropicalis ENSXETG00000006022 N 0.000
POLR2G Ornithorhynchus anatinus ENSOANG00000005808 N 0.000
Polr2g Mus musculus ENSMUSG00000071662 N 0.000
POLR2G Monodelphis domestica ENSMODG00000007984 N 0.000
POLR2G Canis familiaris ENSCAFG00000015461 N 0.000
POLR2G Cavia porcellus ENSCPOG00000001153 N 0.000
Polr2g Dipodomys ordii ENSDORG00000015696 N 0.000
POLR2G Echinops telfairi ENSETEG00000019637 N 0.000
POLR2G Homo sapiens ENSG00000168002 N 0.000
POLR2G Gasterosteus aculeatus ENSGACG00000017706 N 0.000
POLR2G Gorilla gorilla ENSGGOG00000011739 N 0.000
POLR2G Loxodonta africana ENSLAFG00000004354 N 0.000
POLR2G Macropus eugenii ENSMEUG00000011547 N 0.000
POLR2G Microcebus murinus ENSMICG00000009967 N 0.000
POLR2G Macaca mulatta ENSMMUG00000014368 N 0.000
POLR2G Anolis carolinensis ENSACAG00000001005 N 0.000
polr2gl Danio rerio ENSDARG00000056127 N 0.000
RPB7_BOVIN Bos taurus ENSBTAG00000009483 N 0.000