THAPSDRAFT_20086 (Thalassiosira pseudonana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Thaps20086 T46249_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Thaps20086 RRM 10 78

Links

Other RRM family RBPs
Other Thalassiosira pseudonana RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.710
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.710
29868.m000351 Ricinus communis 29868.m000351 N 0.797
32497 Aureococcus anophagefferens 32497 N 0.707
68671 Helobdella robusta 68671 N 0.000
AAEL005909 Aedes aegypti AAEL005909 N 0.754
AAH57709 Xenopus laevis AAH57709 N 0.000
AC008073.5 Homo sapiens ENSG00000115128 N 0.710
AGAP002780 Anopheles gambiae AGAP002780 N 0.754
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.739
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.739
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.710
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.725
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.783
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.797
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.783
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.812
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.783
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.000
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.797
CBG06987 Caenorhabditis briggsae CBG06987 N 0.000
CBN08400 Caenorhabditis brenneri CBN08400 N 0.000
CG13298 Drosophila melanogaster FBgn0035692 N 0.739
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.812
CJA01433 Caenorhabditis japonica CJA01433 N 0.000
CMU_001200 Cryptosporidium muris CMU_001200 N 0.000
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.754
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.754
CRE22109 Caenorhabditis remanei CRE22109 N 0.000
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.797
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.000
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.754
EDO06533.1 Babesia bovis EDO06533.1 N 0.754
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.710
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.710
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.000
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.754
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.710
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.768
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.710
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.710
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.710
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.710
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.710
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.710
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.710
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.000
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.710
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.710
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.710
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.710
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.710
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.725
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.725
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.710
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.710
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.710
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.768
estExt_fgenesh1_pg.C_120176 Monosiga brevicollis estExt_fgenesh1_pg.C_120176 N 0.000
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.841
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.783
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.739
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.000
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.797
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.768
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.000
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.768
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.797
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.725
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.710
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.725
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.000
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.000
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.826
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.725
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.812
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.000
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.768
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.739
GD13137 Drosophila simulans FBgn0184859 N 0.739
GE20495 Drosophila yakuba FBgn0068445 N 0.739
GF10910 Drosophila ananassae FBgn0087950 N 0.739
GG14070 Drosophila erecta FBgn0106332 N 0.739
GH16287 Drosophila grimshawi FBgn0123758 N 0.739
GI13232 Drosophila mojavensis FBgn0135989 N 0.739
GJ12004 Drosophila virilis FBgn0199256 N 0.739
GK17258 Drosophila willistoni FBgn0219257 N 0.739
GL22529 Drosophila persimilis FBgn0160121 N 0.739
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.812
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.797
GM13852 Drosophila sechellia FBgn0168783 N 0.739
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.000
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.797
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.797
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.725
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.725
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.797
ISCW024082 Ixodes scapularis ISCW024082 N 0.739
LOAG_04189 Loa loa LOAG_04189 N 0.739
LOC100056247 Equus caballus ENSECAG00000015618 N 0.710
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.710
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.812
MDP0000185506 Malus x domestica MDP0000185506 N 0.797
MDP0000916880 Malus x domestica MDP0000916880 N 0.754
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.812
mgf016428m Mimulus guttatus mgf016428m N 0.812
Minc01156 Meloidogyne incognita Minc01156 N 0.000
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.739
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.739
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.768
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.768
PFL1200c Plasmodium falciparum PFL1200c N 0.725
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.841
PHUM617060 Pediculus humanus PHUM617060 N 0.768
PITG_10282 Phytophthora infestans PITG_10282 N 0.841
PK21780.1 Cannabis sativa PK21780.1 N 0.797
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.725
ppa013405m Prunus persica ppa013405m N 0.797
ppa013407m Prunus persica ppa013407m N 0.797
PPA24922 Pristionchus pacificus PPA24922 N 0.000
PVX_123875 Plasmodium vivax PVX_123875 N 0.725
PY07239 Plasmodium yoelii PY07239 N 0.710
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.710
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.000
SB01G003790 Sorghum bicolor Sb01g003790 N 0.797
SF3B14 Gallus gallus ENSGALG00000016501 N 0.710
sf3b14 Danio rerio ENSDARG00000009753 N 0.710
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.710
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.710
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.000
Smp_032060 Schistosoma mansoni Smp_032060 N 0.000
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.000
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.826
s_454910 Phytophthora sojae s_454910 N 0.841
TA13725 Theileria annulata TA13725 N 0.754
TP02_0539 Theileria parva TP02_0539 N 0.710
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.710
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.000
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.783
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.710
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.710
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.710