estExt_fgenesh2_pm.C_690014 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pm.C_690014 T50948_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.760
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.760
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pm.C_690014 RRM 5 67
estExt_fgenesh2_pm.C_690014 RRM 121 186

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAC59682 Xenopus laevis AAC59682 I 0.000
AAC59683 Xenopus laevis AAC59683 I 0.000
AAH43638 Xenopus laevis AAH43638 I 0.000
AAH73457 Xenopus laevis AAH73457 I 0.000
AAI12953 Xenopus laevis AAI12953 I 0.000
AAI31885 Xenopus laevis AAI31885 I 0.000
AAI70204 Xenopus laevis AAI70204 I 0.000
AAY79165 Xenopus laevis AAY79165 I 0.000
amel4_ncbi_hmm37854 Apis mellifera amel4_ncbi_hmm37854 I 0.000
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.000
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.000
CABZ01043311.1 Danio rerio ENSDARG00000078462 I 0.000
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.000
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.000
FMR1 Gasterosteus aculeatus ENSGACG00000018742 I 0.000
fmr1 Danio rerio ENSDARG00000037433 I 0.000
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.000
FMR1 Canis familiaris ENSCAFG00000019085 I 0.000
FMR1 Oryzias latipes ENSORLG00000009094 I 0.000
FXR1 Oryzias latipes ENSORLG00000011787 I 0.000
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.000
Fxr1 Mus musculus ENSMUSG00000027680 I 0.000
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.000
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.000
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.000
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.000
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.000
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.000
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.000
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.000
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.000
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.000
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.000
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.000
FXR1 Sus scrofa ENSSSCG00000011769 I 0.000
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.000
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.000
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.000
FXR1 Equus caballus ENSECAG00000007560 I 0.000
FXR1 Echinops telfairi ENSETEG00000006891 I 0.000
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.000
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.000
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.000
FXR1 Homo sapiens ENSG00000114416 D 0.000
fxr1 Danio rerio ENSDARG00000022968 I 0.000
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.000
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.000
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.000
FXR1 Canis familiaris ENSCAFG00000011582 I 0.000
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.000
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.000
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.000
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.000
FXR1_RAT Rattus norvegicus ENSRNOG00000011938 I 0.000
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.000
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.000
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.000
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.000
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.000
fxr2 Danio rerio ENSDARG00000016260 I 0.000
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.000
FXR2 Bos taurus ENSBTAG00000005462 I 0.000
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.000
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.000
FXR2 Canis familiaris ENSCAFG00000016685 I 0.000
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.000
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.000
FXR2 Sus scrofa ENSSSCG00000017953 I 0.000
FXR2 Gasterosteus aculeatus ENSGACG00000019983 I 0.000
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.000
Fxr2 Mus musculus ENSMUSG00000018765 I 0.000
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.000
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.000
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.000
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.000
FXR2 Microcebus murinus ENSMICG00000014799 I 0.000
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.000
FXR2 Homo sapiens ENSG00000129245 D 0.000
FXR2 Oryzias latipes ENSORLG00000011571 I 0.000
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.000
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.000
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.000
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.000
FXR2 Echinops telfairi ENSETEG00000018613 I 0.000
FXR2 Felis catus ENSFCAG00000009620 I 0.000
FXR2 Procavia capensis ENSPCAG00000013184 I 0.000
LOC100147323 Equus caballus ENSECAG00000007051 I 0.000
nasonia_NCBI_hmm462784 Nasonia vitripennis nasonia_NCBI_hmm462784 I 0.000
P51113 Xenopus laevis P51113 I 0.000
P51115 Xenopus laevis P51115 I 0.000
PHUM440700 Pediculus humanus PHUM440700 I 0.000
Q2KHP9 Xenopus laevis Q2KHP9 I 0.000
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.000
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.000
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.000