SB03G039600 (Sorghum bicolor)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Sb03g039600 T24447_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g039600.1 PUF 722 756
Sb03g039600.1 PUF 758 792
Sb03g039600.1 PUF 794 828
Sb03g039600.1 PUF 830 864
Sb03g039600.1 PUF 866 900
Sb03g039600.1 PUF 903 937
Sb03g039600.1 PUF 939 972
Sb03g039600.1 PUF 986 1015

Links

Other PUF family RBPs
Other Sorghum bicolor RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.754
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.819
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.819
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.826
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.761
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.830
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.819
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.819
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.750
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.831
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.831
PK00601.1 Cannabis sativa PK00601.1 N 0.851
PK01617.1 Cannabis sativa PK01617.1 N 0.801
PK21390.1 Cannabis sativa PK21390.1 N 0.862
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.840
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.844
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.786
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.859
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.862
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.769
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.851
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.851
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.762
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.855
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.855
MDP0000176743 Malus x domestica MDP0000176743 N 0.779
MDP0000119814 Malus x domestica MDP0000119814 N 0.739
MDP0000191652 Malus x domestica MDP0000191652 N 0.789
MDP0000776183 Malus x domestica MDP0000776183 N 0.844
MDP0000319167 Malus x domestica MDP0000319167 N 0.844
MDP0000314338 Malus x domestica MDP0000314338 N 0.851
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.862
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.855
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.851
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.804
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.765
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.851
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.851
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.862
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.855
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.776
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.800
mgf015734m Mimulus guttatus mgf015734m N 0.825
mgf011401m Mimulus guttatus mgf011401m N 0.761
mgf015234m Mimulus guttatus mgf015234m N 0.815
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.702
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.832
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.838
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.702
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.832
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.838
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.750
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.949
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.754
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.773
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.768
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.786
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.705
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.779
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.819
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.865
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.830
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.876
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.768
ppa000627m Prunus persica ppa000627m N 0.840
ppa000626m Prunus persica ppa000626m N 0.855
ppa000731m Prunus persica ppa000731m N 0.804
29595.m000292 Ricinus communis 29595.m000292 N 0.793
30143.m001162 Ricinus communis 30143.m001162 N 0.830
30143.m001164 Ricinus communis 30143.m001164 N 0.870
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.782
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.745
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.749
SB09G001090 Sorghum bicolor Sb09g001090 N 0.841
SB04G037410 Sorghum bicolor Sb04g037410 N 0.750
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.862
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.863
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.769
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.743
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.838
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.838