SNRPA_BOVIN (Bos taurus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSBTAG00000009077 T34824_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		1.000
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		1.000
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		1.000
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		1.000
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		1.000
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		1.000
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		1.000
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		1.000
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000011963 RRM 17 88
ENSBTAP00000011963 RRM 215 280

Links

Other RRM family RBPs
Other Bos taurus RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Chro.40082 Cryptosporidium hominis Chro.40082 N 0.000
CMU_012780 Cryptosporidium muris CMU_012780 N 0.000
cgd4_650 Cryptosporidium parvum cgd4_650 N 0.000
NCLIV_006970 Neospora caninum NCLIV_006970 N 0.000
TP01_0327 Theileria parva TP01_0327 N 0.000
TGGT1_000360 Toxoplasma gondii TGGT1_000360 N 0.000
TGME49_076180 Toxoplasma gondii TGME49_076180 N 0.000
TGVEG_055290 Toxoplasma gondii TGVEG_055290 N 0.000