CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF4
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000002389
T37398_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.752
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.752
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000003112
RRM
4
66
VYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKELCGERVI
ENSGACP00000003112
RRM
106
171
LIVENLSSRCSWQDLKDYMRQAGEVTYADTHKGRRNEGVIEFRLYSDMKRALEKLDGTEVNGRKIR
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
142 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002871677.1
Arabidopsis lyrata
fgenesh2_kg.6__1644__AT5G16540.1
N
0.000
XM_002882207.1
Arabidopsis lyrata
fgenesh2_kg.3__226__AT3G02830.1
N
0.000
ZFN1
Arabidopsis thaliana
AT3G02830-TAIR-G
N
0.000
ZFN3
Arabidopsis thaliana
AT5G16540-TAIR-G
N
0.000
BRADI2G58770
Brachypodium distachyon
BRADI2G58770
N
0.000
BRADI4G08050
Brachypodium distachyon
BRADI4G08050
N
0.000
BRADI4G19010
Brachypodium distachyon
BRADI4G19010
N
0.000
PK23881.1
Cannabis sativa
PK23881.1
N
0.000
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.000
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.000
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.000
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.000
MDP0000577111
Malus x domestica
MDP0000577111
N
0.000
MDP0000178517
Malus x domestica
MDP0000178517
N
0.000
MDP0000665604
Malus x domestica
MDP0000665604
N
0.000
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.000
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.000
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.000
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.000
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.000
Medtr7g089530
Medicago truncatula
Medtr7g089530
N
0.000
mgf007299m
Mimulus guttatus
mgf007299m
N
0.000
BGIOSIBCE036312
Oryza indica
BGIOSIBCE036312
N
0.000
BGIOSIBCE004747
Oryza indica
BGIOSIBCE004747
N
0.000
LOC_Os01g68860
Oryza sativa
LOC_Os01g68860
N
0.000
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.000
LOC_Os12g21700
Oryza sativa
LOC_Os12g21700
N
0.000
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.000
ppa005056m
Prunus persica
ppa005056m
N
0.000
ppa005813m
Prunus persica
ppa005813m
N
0.000
30128.m009030
Ricinus communis
30128.m009030
N
0.000
29726.m004014
Ricinus communis
29726.m004014
N
0.000
gw1.151.82.1
Selaginella moellendorfii
gw1.151.82.1
N
0.000
Sb03g043810
Sorghum bicolor
Sb03g043810
N
0.000
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.000
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.000
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.000
GRMZM2G146514
Zea mays
GRMZM2G146514
N
0.000
GRMZM2G107491
Zea mays
GRMZM2G107491
N
0.000
GRMZM2G087032
Zea mays
GRMZM2G087032
N
0.000