SRSF4 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000002389 T37398_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.752
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000003112 RRM 4 66
ENSGACP00000003112 RRM 106 171

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.000
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.000
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.000
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.000
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.000
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.000
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.000
PK23881.1 Cannabis sativa PK23881.1 N 0.000
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.000
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.000
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.000
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.000
MDP0000577111 Malus x domestica MDP0000577111 N 0.000
MDP0000178517 Malus x domestica MDP0000178517 N 0.000
MDP0000665604 Malus x domestica MDP0000665604 N 0.000
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.000
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.000
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.000
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.000
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.000
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.000
mgf007299m Mimulus guttatus mgf007299m N 0.000
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.000
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.000
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.000
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.000
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.000
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.000
ppa005056m Prunus persica ppa005056m N 0.000
ppa005813m Prunus persica ppa005813m N 0.000
30128.m009030 Ricinus communis 30128.m009030 N 0.000
29726.m004014 Ricinus communis 29726.m004014 N 0.000
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.000
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.000
SB05G013190 Sorghum bicolor Sb05g013190 N 0.000
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.000
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.000
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.000
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.000
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.000