CELF3 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000006618 T41429_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.810
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000007057 RRM 13 79
ENSSSCP00000007057 RRM 98 166
ENSSSCP00000007057 RRM 382 452

Links

Other RRM family RBPs
Other Sus scrofa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.981
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.800
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.800
CELF6 Bos taurus ENSBTAG00000014092 I 0.800
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.981
Bm1_27610 Brugia malayi Bm1_27610 I 0.757
CBG15358 Caenorhabditis briggsae CBG15358 I 0.701
CRE09771 Caenorhabditis remanei CRE09771 I 0.701
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.981
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.795
CELF3 Canis familiaris ENSCAFG00000012794 I 0.981
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.795
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.981
celf5 Danio rerio ENSDARG00000071375 I 0.810
CELF3 Danio rerio ENSDARG00000006983 I 0.857
celf3 Danio rerio ENSDARG00000034668 I 0.881
CELF3 Dasypus novemcinctus ENSDNOG00000011384 N 0.837
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.733
CELF3 Equus caballus ENSECAG00000020365 I 0.981
CELF3 Erinaceus europaeus ENSEEUG00000010622 N 0.754
CELF6 Felis catus ENSFCAG00000016249 I 0.800
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.900
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.895
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.800
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 1.000
BRUNOL5 Homo sapiens ENSG00000161082 D 0.810
CELF3 Homo sapiens ENSG00000159409 I 1.000
BRUNOL6 Homo sapiens ENSG00000140488 D 0.800
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.783
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.795
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.981
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.899
HEXA Macaca mulatta ENSMMUG00000010687 I 0.800
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.762
CELF3 Microcebus murinus ENSMICG00000010644 N 0.816
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.819
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.981
Celf6 Mus musculus ENSMUSG00000032297 I 0.805
Celf3 Mus musculus ENSMUSG00000028137 I 0.981
Celf4 Mus musculus ENSMUSG00000024268 I 0.790
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.986
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.720
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.795
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.714
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.981
CELF5 Oryzias latipes ENSORLG00000004600 I 0.800
CELF3 Oryzias latipes ENSORLG00000002630 I 0.773
CELF4 Oryzias latipes ENSORLG00000008913 I 0.781
CELF3 Oryzias latipes ENSORLG00000010447 I 0.862
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.981
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.786
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.786
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.795
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.701
ENSPPYG00000000859 Pongo pygmaeus ENSPPYG00000000859 N 0.708
CELF3 Procavia capensis ENSPCAG00000001623 I 0.986
CELF3 Pteropus vampyrus ENSPVAG00000015012 N 0.846
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.800
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.805
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.981
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.708
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.708
CELF6 Sus scrofa ENSSSCG00000001928 I 0.800
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.876
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.767
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.749
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.895
CELF3 Tursiops truncatus ENSTTRG00000009835 N 0.846
Q91579 Xenopus laevis Q91579 I 0.910
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.900
ACH69785 Xenopus laevis ACH69785 I 0.786
ACH69784 Xenopus laevis ACH69784 I 0.706
AAH72134 Xenopus laevis AAH72134 I 0.910
AAH57704 Xenopus laevis AAH57704 I 0.910
AAH46942 Xenopus laevis AAH46942 I 0.900
AAA81375 Xenopus laevis AAA81375 I 0.910
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.776
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.800