ENSCJAG00000032970 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000032970 T35720_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.837
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.837
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.837
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.816
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000045537 RRM 16 85
ENSCJAP00000045537 RRM 107 176

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

198 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.851
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.837
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.837
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.837
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.837
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.837
HNRNPA1 Homo sapiens ENSG00000135486 D 0.837
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.837
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.837
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.837
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.837
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.837
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.837
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.837
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.837
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.837
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.837
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.837
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.837
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.837
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.837
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.837
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.837
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.837
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.837
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.837
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.837
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.837
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.837
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.837
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.836
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.830
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.830
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.830
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.830
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.830
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.830
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.830
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.830
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.830
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.830
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.829
LOC785445 Bos taurus ENSBTAG00000025621 I 0.829
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.829
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.823
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.823
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.823
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.823
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.823
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.823
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.823
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.823
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.823
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.823
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.821
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.816
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.816
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.816
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.816
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.816
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.816
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.816
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.814
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.814
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.814
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.814
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.809
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.809
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.809
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.807
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.807
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.803
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.801
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.801
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.801
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.800
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.800
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.800
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.800
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.796
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.794
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.794
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.793
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.793
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.793
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.793
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.793
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.789
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.787
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.786
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.786
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.786
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.786
LOC100054206 Equus caballus ENSECAG00000006699 I 0.782
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.782
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.780
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.780
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.779
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.779
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.779
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.779
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.775
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.775
AAH45260 Xenopus laevis AAH45260 I 0.773
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.773
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.773
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.771
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.771
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.771
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.769
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.768
CBU92546 Xenopus laevis CBU92546 I 0.766
CBF67672 Xenopus laevis CBF67672 I 0.766
AAH72090 Xenopus laevis AAH72090 I 0.766
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.762
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.761
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.761
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.761
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.759
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.757
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.755
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.754
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.754
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.754
CBU92428 Xenopus laevis CBU92428 I 0.752
AAA49742 Xenopus laevis AAA49742 I 0.752
P17130 Xenopus laevis P17130 I 0.752
CBF67555 Xenopus laevis CBF67555 I 0.752
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.752
AAA49741 Xenopus laevis AAA49741 I 0.752
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.752
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.750
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.750
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.748
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.746
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.746
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.746
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.746
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.745
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.743
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.739
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.736
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.732
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.730
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.725
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.725
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.724
Gm8991 Mus musculus ENSMUSG00000059179 I 0.723
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.723
AAA49949 Xenopus laevis AAA49949 I 0.723
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.723
P51968 Xenopus laevis P51968 I 0.723
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.719
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.719
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.718
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.718
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.718
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.718
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.718
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.718
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.718
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.718
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.718
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.718
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.718
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.718
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.718
HNRNPA3 Homo sapiens ENSG00000170144 I 0.718
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.718
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.718
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.718
LOC781499 Bos taurus ENSBTAG00000021580 I 0.718
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.718
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.718
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.717
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.716
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.716
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.716
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.716
LOC100066794 Equus caballus ENSECAG00000023237 I 0.716
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.714
AAA49950 Xenopus laevis AAA49950 I 0.713
AAI69881 Xenopus laevis AAI69881 I 0.713
CBU92451 Xenopus laevis CBU92451 I 0.713
CBF67578 Xenopus laevis CBF67578 I 0.713
P51992 Xenopus laevis P51992 I 0.713
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.709
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.709
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.709
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.708
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.703
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.703
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.702
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.701
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.701
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.701
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.700