ENSCJAG00000007639 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000007639 T35540_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.832
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.832
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.832
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.811
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000014149 RRM 9 78
ENSCJAP00000014149 RRM 100 171

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

204 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100054206 Equus caballus ENSECAG00000006699 I 0.831
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.824
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.812
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.812
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.812
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.812
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.812
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.812
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.812
HNRNPA1 Homo sapiens ENSG00000135486 D 0.812
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.812
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.812
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.812
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.812
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.812
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.812
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.812
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.812
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.812
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.812
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.812
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.812
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.812
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.812
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.812
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.812
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.812
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.812
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.812
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.812
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.812
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.812
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.810
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.806
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.806
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.806
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.806
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.806
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.806
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.806
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.806
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.806
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.804
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.803
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.799
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.799
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.799
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.799
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.799
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.799
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.799
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.799
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.796
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.792
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.792
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.792
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.792
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.792
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.792
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.792
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.792
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.789
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.789
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.785
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.785
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.785
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.785
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.785
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.785
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.785
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.785
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.785
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.785
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.785
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.783
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.783
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.782
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.782
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.782
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.782
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.778
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.778
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.778
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.778
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.778
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.778
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.775
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.775
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.771
LOC785445 Bos taurus ENSBTAG00000025621 I 0.771
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.771
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.768
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.768
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.768
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.768
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.764
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.764
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.764
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.764
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.761
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.760
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.757
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.757
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.757
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.757
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.757
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.757
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.754
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.750
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.750
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.750
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.750
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.750
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.750
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.750
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.750
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.747
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.746
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.743
CBF67672 Xenopus laevis CBF67672 I 0.743
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.743
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.743
AAH72090 Xenopus laevis AAH72090 I 0.743
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.743
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.743
CBU92546 Xenopus laevis CBU92546 I 0.743
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.743
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.740
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.740
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.738
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.736
AAH45260 Xenopus laevis AAH45260 I 0.736
CBF67555 Xenopus laevis CBF67555 I 0.736
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.736
P17130 Xenopus laevis P17130 I 0.736
CBU92428 Xenopus laevis CBU92428 I 0.736
AAA49741 Xenopus laevis AAA49741 I 0.736
AAA49742 Xenopus laevis AAA49742 I 0.736
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.736
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.736
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.736
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.736
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.735
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.729
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.729
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.729
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.728
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.727
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.722
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.722
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.722
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.722
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.719
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.719
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.717
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.715
AAA49950 Xenopus laevis AAA49950 I 0.715
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.715
AAI69881 Xenopus laevis AAI69881 I 0.715
CBU92451 Xenopus laevis CBU92451 I 0.715
P51992 Xenopus laevis P51992 I 0.715
CBF67578 Xenopus laevis CBF67578 I 0.715
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.713
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.712
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.712
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.710
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.710
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.710
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.710
HNRNPA3 Homo sapiens ENSG00000170144 I 0.710
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.710
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.710
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.710
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.710
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.710
LOC781499 Bos taurus ENSBTAG00000021580 I 0.710
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.710
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.710
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.710
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.710
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.710
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.710
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.710
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.710
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.710
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.710
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.708
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.708
Gm8991 Mus musculus ENSMUSG00000059179 I 0.708
P51968 Xenopus laevis P51968 I 0.708
AAA49949 Xenopus laevis AAA49949 I 0.708
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.708
LOC100066794 Equus caballus ENSECAG00000023237 I 0.708
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.708
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.705
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.705
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.703
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.703
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.703
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.702
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.701
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.701
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.701
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.701