ENSCAFG00000007198 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000007198 T35050_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.878
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.878
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.878
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.865
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000035024 RRM 5 80
ENSCAFP00000035024 RRM 96 166

Links

Other RRM family RBPs
Other Canis familiaris RBPs

229 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.892
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.878
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.878
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.878
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.878
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.878
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.878
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.878
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.878
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.878
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.878
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.878
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.878
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.878
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.878
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.878
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.878
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.878
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.878
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.878
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.878
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.878
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.878
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.878
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.878
HNRNPA1 Homo sapiens ENSG00000135486 D 0.878
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.878
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.878
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.878
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.872
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.872
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.872
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.872
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.872
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.872
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.872
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.872
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.872
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.871
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.865
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.865
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.865
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.865
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.865
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.865
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.865
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.865
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.865
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.864
LOC785445 Bos taurus ENSBTAG00000025621 I 0.864
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.858
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.858
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.858
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.858
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.858
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.857
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.851
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.851
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.851
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.851
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.851
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.850
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.850
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.850
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.846
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.845
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.845
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.845
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.844
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.844
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.839
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.838
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.838
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.838
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.838
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.837
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.837
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.831
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.830
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.830
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.830
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.830
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.824
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.824
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.824
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.823
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.823
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.823
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.823
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.818
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.816
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.816
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.816
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.816
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.816
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.816
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.816
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.812
LOC100054206 Equus caballus ENSECAG00000006699 I 0.812
AAH45260 Xenopus laevis AAH45260 I 0.811
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.811
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.810
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.810
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.810
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.810
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.805
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.805
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.805
AAH72090 Xenopus laevis AAH72090 I 0.804
CBF67672 Xenopus laevis CBF67672 I 0.804
CBU92546 Xenopus laevis CBU92546 I 0.804
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.803
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.799
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.799
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.797
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.797
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.797
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.793
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.792
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.792
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.792
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.792
AAA49742 Xenopus laevis AAA49742 I 0.791
AAA49741 Xenopus laevis AAA49741 I 0.791
CBF67555 Xenopus laevis CBF67555 I 0.791
CBU92428 Xenopus laevis CBU92428 I 0.791
P17130 Xenopus laevis P17130 I 0.791
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.789
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.789
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.789
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.787
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.787
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.785
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.785
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.785
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.779
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.777
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.777
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.776
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.776
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.776
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.773
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.772
P51968 Xenopus laevis P51968 I 0.770
AAA49949 Xenopus laevis AAA49949 I 0.770
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.770
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.769
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.769
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.765
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.765
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.765
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.765
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.765
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.765
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.765
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.765
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.765
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.765
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.765
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.765
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.765
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.765
LOC781499 Bos taurus ENSBTAG00000021580 I 0.765
HNRNPA3 Homo sapiens ENSG00000170144 I 0.765
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.765
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.765
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.765
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.765
LOC100066794 Equus caballus ENSECAG00000023237 I 0.764
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.764
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.764
Gm8991 Mus musculus ENSMUSG00000059179 I 0.764
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.764
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.764
CBU92451 Xenopus laevis CBU92451 I 0.760
P51992 Xenopus laevis P51992 I 0.760
CBF67578 Xenopus laevis CBF67578 I 0.760
AAI69881 Xenopus laevis AAI69881 I 0.760
AAA49950 Xenopus laevis AAA49950 I 0.760
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.758
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.758
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.757
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.757
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.752
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.752
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.750
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.747
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.745
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.743
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.743
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.743
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.737
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.736
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.736
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.735
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.735
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.733
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.733
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.732
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.730
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.728
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.727
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.725
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.724
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.724
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.724
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.723
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.718
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.718
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.717
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.717
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.717
zgc:66127 Danio rerio ENSDARG00000011020 I 0.716
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.716
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.715
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.713
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.713
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.712
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.711
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.711
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.711
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.709
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.709
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.709
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.707
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.706
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.705
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.704
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.704