ROD1 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000002790 T42016_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.740
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.740
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.740
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000005351 RRM 62 116
ENSTNIP00000005351 RRM 184 250
ENSTNIP00000005351 RRM 342 408
ENSTNIP00000005351 RRM 461 526

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.950
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.751
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.751
AAF00041 Xenopus laevis AAF00041 I 0.748
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.744
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.744
AAH45068 Xenopus laevis AAH45068 I 0.744
PTBP1 Homo sapiens ENSG00000011304 D 0.744
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.740
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.740
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.740
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.740
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.736
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.734
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.733
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.733
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.733
ptbp1a Danio rerio ENSDARG00000019362 I 0.730
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.729
ROD1 Danio rerio ENSDARG00000043757 I 0.729
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.729
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.729
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.725
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.725
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.724
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.722
PTBP1 Equus caballus ENSECAG00000018845 I 0.717
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.717
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.713
ptbp1b Danio rerio ENSDARG00000031907 I 0.713
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.712
ROD1 Sus scrofa ENSSSCG00000005466 I 0.711
ROD1 Equus caballus ENSECAG00000021243 I 0.711
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.708
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.708
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.708
Rod1 Mus musculus ENSMUSG00000028382 I 0.708
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.705
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.704
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.704
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.700
ROD1 Homo sapiens ENSG00000119314 I 0.700
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.700
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.700
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.700
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.700
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.700