rod1 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000002225 T42826_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.812
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.812
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.812
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000004736 RRM 61 114
ENSXETP00000004736 RRM 184 250
ENSXETP00000004736 RRM 353 419
ENSXETP00000004736 RRM 470 534

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.885
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.885
ROD1 Homo sapiens ENSG00000119314 I 0.885
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.885
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.885
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.881
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.881
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.881
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.881
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.877
Rod1 Mus musculus ENSMUSG00000028382 I 0.874
ROD1 Sus scrofa ENSSSCG00000005466 I 0.870
ROD1 Equus caballus ENSECAG00000021243 I 0.870
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.870
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.870
ROD1 Bos taurus ENSBTAG00000016750 I 0.866
ROD1 Danio rerio ENSDARG00000043757 I 0.836
ROD1 Canis familiaris ENSCAFG00000003015 I 0.834
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.805
PTBP1 Homo sapiens ENSG00000011304 D 0.805
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.805
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.805
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.805
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.805
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.805
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.805
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.805
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.802
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.801
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.798
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.798
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.798
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.798
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.797
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.797
AAH45068 Xenopus laevis AAH45068 I 0.791
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.791
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.790
AAF00041 Xenopus laevis AAF00041 I 0.790
PTBP1 Equus caballus ENSECAG00000018845 I 0.790
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.789
ptbp1a Danio rerio ENSDARG00000019362 I 0.775
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.771
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.767
ptbp1b Danio rerio ENSDARG00000031907 I 0.767
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.763
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.759
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.755
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.754
ROD1 Sorex araneus ENSSARG00000002649 N 0.751
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.750
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.747
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.746
ROD1 Procavia capensis ENSPCAG00000002288 N 0.743
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.741
AAH97557 Xenopus laevis AAH97557 I 0.739
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.739
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.735
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.727
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.724
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.723
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.717
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.717
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.717
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.716
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.713
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.713
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.713
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.713
PTBP2 Homo sapiens ENSG00000117569 I 0.713
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.713
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.713
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.713
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.713
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.713
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.713
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.713
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.713
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.713
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.713
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.713
LOC100057336 Equus caballus ENSECAG00000015783 I 0.710
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.709
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.709
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.704