Rod1 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000028382 T39288_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.801
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.801
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.801
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000030076 RRM 32 85
ENSMUSP00000030076 RRM 155 221
ENSMUSP00000030076 RRM 331 397
ENSMUSP00000030076 RRM 448 512
ENSMUSP00000099947 RRM 29 82
ENSMUSP00000099947 RRM 152 218
ENSMUSP00000099947 RRM 328 394
ENSMUSP00000099947 RRM 445 509
ENSMUSP00000103159 RRM 29 82
ENSMUSP00000103159 RRM 152 218
ENSMUSP00000103159 RRM 328 394
ENSMUSP00000103159 RRM 445 509

Links

Other RRM family RBPs
Other Mus musculus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.996
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.984
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.976
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.976
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.972
ROD1 Homo sapiens ENSG00000119314 I 0.972
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.972
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.972
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.964
ROD1 Equus caballus ENSECAG00000021243 I 0.961
ROD1 Sus scrofa ENSSSCG00000005466 I 0.961
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.957
ROD1 Bos taurus ENSBTAG00000016750 I 0.953
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.937
ROD1 Canis familiaris ENSCAFG00000003015 I 0.929
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.917
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.874
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.854
ROD1 Sorex araneus ENSSARG00000002649 N 0.838
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.838
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.834
ROD1 Procavia capensis ENSPCAG00000002288 N 0.830
ROD1 Danio rerio ENSDARG00000043757 I 0.828
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.809
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.809
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.805
AAF00041 Xenopus laevis AAF00041 I 0.805
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.802
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.798
AAH45068 Xenopus laevis AAH45068 I 0.795
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.794
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.794
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.794
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.794
PTBP1 Homo sapiens ENSG00000011304 D 0.794
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.793
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.793
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.793
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.786
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.786
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.786
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.786
PTBP1 Equus caballus ENSECAG00000018845 I 0.786
ROD1 Vicugna pacos ENSVPAG00000006136 N 0.783
ptbp1a Danio rerio ENSDARG00000019362 I 0.775
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.771
ptbp1b Danio rerio ENSDARG00000031907 I 0.767
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.764
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.762
ROD1 Pteropus vampyrus ENSPVAG00000002177 N 0.759
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.758
AAH97557 Xenopus laevis AAH97557 I 0.755
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.754
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.751
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.749
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.747
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.746
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.743
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.736
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.735
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.735
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.733
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.733
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.733
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.733
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.733
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.733
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.733
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.733
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.733
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.733
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.733
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.733
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.733
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.733
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.733
PTBP2 Homo sapiens ENSG00000117569 I 0.733
LOC100057336 Equus caballus ENSECAG00000015783 I 0.730
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.729
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.729
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.729
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.727
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.724
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.721
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.715
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.708
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.704