ROD1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000043757 T36150_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.801
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.801
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.801
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000040307 RRM 31 86
ENSDARP00000040307 RRM 155 221
ENSDARP00000040307 RRM 330 396
ENSDARP00000040307 RRM 447 511

Links

Other RRM family RBPs
Other Danio rerio RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Sus scrofa ENSSSCG00000005466 I 0.839
ROD1 Equus caballus ENSECAG00000021243 I 0.839
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.836
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.836
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.836
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.832
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.832
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.832
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.832
ROD1 Homo sapiens ENSG00000119314 I 0.832
ROD1 Bos taurus ENSBTAG00000016750 I 0.831
Rod1 Mus musculus ENSMUSG00000028382 I 0.828
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.828
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.828
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.828
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.824
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.824
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.816
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.816
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.808
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.808
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.805
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.805
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.801
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.801
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.801
PTBP1 Homo sapiens ENSG00000011304 D 0.801
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.800
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.797
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.797
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.797
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.794
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.793
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.793
AAH45068 Xenopus laevis AAH45068 I 0.790
ROD1 Canis familiaris ENSCAFG00000003015 I 0.789
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.789
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.786
ptbp1a Danio rerio ENSDARG00000019362 I 0.786
PTBP1 Equus caballus ENSECAG00000018845 I 0.785
AAF00041 Xenopus laevis AAF00041 I 0.781
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.781
ptbp1b Danio rerio ENSDARG00000031907 I 0.777
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.766
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.758
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.753
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.750
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.745
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.742
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.739
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.735
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.735
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.735
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.735
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.734
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.732
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.732
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.732
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.732
PTBP2 Homo sapiens ENSG00000117569 I 0.732
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.732
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.732
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.732
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.732
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.732
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.732
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.732
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.732
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.732
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.732
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.732
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.730
AAH97557 Xenopus laevis AAH97557 I 0.730
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.729
LOC100057336 Equus caballus ENSECAG00000015783 I 0.729
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.729
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.728
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.728
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.727
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.719
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.719
ROD1 Sorex araneus ENSSARG00000002649 N 0.715
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.707