ROD1 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000007042 T42256_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.733
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.733
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.733
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000017300 RRM 10 68
ENSTRUP00000017300 RRM 136 202
ENSTRUP00000017300 RRM 304 370
ENSTRUP00000017300 RRM 423 488
ENSTRUP00000017301 RRM 10 68
ENSTRUP00000017301 RRM 136 202
ENSTRUP00000017301 RRM 299 365
ENSTRUP00000017301 RRM 418 483
ENSTRUP00000017302 RRM 10 68
ENSTRUP00000017302 RRM 136 202
ENSTRUP00000017302 RRM 298 364
ENSTRUP00000017302 RRM 417 482
ENSTRUP00000017303 RRM 10 68
ENSTRUP00000017303 RRM 136 202
ENSTRUP00000017303 RRM 284 350
ENSTRUP00000017303 RRM 403 468
ENSTRUP00000017304 RRM 10 68
ENSTRUP00000017304 RRM 136 202
ENSTRUP00000017304 RRM 238 288
ENSTRUP00000017304 RRM 341 406

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.950
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.754
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.754
AAF00041 Xenopus laevis AAF00041 I 0.751
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.747
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.747
PTBP1 Homo sapiens ENSG00000011304 D 0.747
AAH45068 Xenopus laevis AAH45068 I 0.747
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.743
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.743
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.743
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.743
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.739
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.737
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.736
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.736
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.736
ptbp1a Danio rerio ENSDARG00000019362 I 0.733
ROD1 Danio rerio ENSDARG00000043757 I 0.732
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.732
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.732
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.732
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.728
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.727
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.725
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.725
ptbp1b Danio rerio ENSDARG00000031907 I 0.720
PTBP1 Equus caballus ENSECAG00000018845 I 0.720
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.719
ROD1 Equus caballus ENSECAG00000021243 I 0.718
ROD1 Sus scrofa ENSSSCG00000005466 I 0.718
AAH97557 Xenopus laevis AAH97557 I 0.718
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.716
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.715
Rod1 Mus musculus ENSMUSG00000028382 I 0.715
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.712
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.712
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.712
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.712
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.708
ROD1 Homo sapiens ENSG00000119314 I 0.708
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.708
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.708
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.708
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.708
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.708
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.701