ROD1 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000011586 T35836_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.805
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.805
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.805
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000010423 RRM 22 75
ENSCPOP00000010423 RRM 145 211
ENSCPOP00000010423 RRM 321 387
ENSCPOP00000010423 RRM 438 502

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.992
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.992
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.988
ROD1 Homo sapiens ENSG00000119314 I 0.988
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.988
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.988
Rod1 Mus musculus ENSMUSG00000028382 I 0.984
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.980
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.980
ROD1 Sus scrofa ENSSSCG00000005466 I 0.976
ROD1 Equus caballus ENSECAG00000021243 I 0.976
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.972
ROD1 Bos taurus ENSBTAG00000016750 I 0.969
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.949
ROD1 Canis familiaris ENSCAFG00000003015 I 0.941
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.925
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.881
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.870
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.854
ROD1 Sorex araneus ENSSARG00000002649 N 0.854
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.850
ROD1 Procavia capensis ENSPCAG00000002288 N 0.846
ROD1 Danio rerio ENSDARG00000043757 I 0.836
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.805
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.805
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.802
AAF00041 Xenopus laevis AAF00041 I 0.802
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.798
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.798
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.798
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.798
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.798
PTBP1 Homo sapiens ENSG00000011304 D 0.798
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.797
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.797
ROD1 Vicugna pacos ENSVPAG00000006136 N 0.794
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.794
AAH45068 Xenopus laevis AAH45068 I 0.791
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.790
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.790
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.790
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.789
PTBP1 Equus caballus ENSECAG00000018845 I 0.782
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.782
ptbp1a Danio rerio ENSDARG00000019362 I 0.775
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.771
ptbp1b Danio rerio ENSDARG00000031907 I 0.767
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.764
ROD1 Pteropus vampyrus ENSPVAG00000002177 N 0.763
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.762
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.754
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.753
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.751
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.751
AAH97557 Xenopus laevis AAH97557 I 0.751
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.750
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.743
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.742
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.740
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.736
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.736
PTBP2 Homo sapiens ENSG00000117569 I 0.736
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.736
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.736
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.736
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.736
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.736
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.736
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.736
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.736
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.736
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.736
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.736
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.736
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.736
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.735
LOC100057336 Equus caballus ENSECAG00000015783 I 0.734
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.733
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.733
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.733
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.732
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.725
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.724
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.723
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.712
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.708
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.704