ROD1 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000011358 T38036_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.797
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.797
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.797
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000009489 RRM 32 85
ENSLAFP00000009489 RRM 155 221
ENSLAFP00000009489 RRM 331 397
ENSLAFP00000009489 RRM 448 512

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.980
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.980
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.980
ROD1 Homo sapiens ENSG00000119314 I 0.976
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.976
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.976
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.976
ROD1 Equus caballus ENSECAG00000021243 I 0.969
ROD1 Sus scrofa ENSSSCG00000005466 I 0.969
Rod1 Mus musculus ENSMUSG00000028382 I 0.964
ROD1 Bos taurus ENSBTAG00000016750 I 0.961
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.960
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.960
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.945
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.937
ROD1 Canis familiaris ENSCAFG00000003015 I 0.933
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.877
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.870
ROD1 Procavia capensis ENSPCAG00000002288 N 0.858
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.854
ROD1 Sorex araneus ENSSARG00000002649 N 0.846
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.838
ROD1 Danio rerio ENSDARG00000043757 I 0.828
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.797
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.797
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.794
AAF00041 Xenopus laevis AAF00041 I 0.794
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.790
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.790
PTBP1 Homo sapiens ENSG00000011304 D 0.790
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.790
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.790
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.790
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.789
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.789
ROD1 Vicugna pacos ENSVPAG00000006136 N 0.787
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.786
AAH45068 Xenopus laevis AAH45068 I 0.783
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.782
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.782
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.782
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.781
PTBP1 Equus caballus ENSECAG00000018845 I 0.778
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.774
ptbp1a Danio rerio ENSDARG00000019362 I 0.771
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.767
ptbp1b Danio rerio ENSDARG00000031907 I 0.763
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.760
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.759
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.753
ROD1 Pteropus vampyrus ENSPVAG00000002177 N 0.747
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.746
AAH97557 Xenopus laevis AAH97557 I 0.743
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.743
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.743
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.742
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.735
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.734
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.733
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.729
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.729
PTBP2 Homo sapiens ENSG00000117569 I 0.729
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.729
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.729
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.729
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.729
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.729
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.729
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.729
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.729
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.729
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.729
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.729
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.729
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.729
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.728
LOC100057336 Equus caballus ENSECAG00000015783 I 0.726
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.725
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.725
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.725
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.724
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.717
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.716
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.715
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.708
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.708
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.700