ROD1 (Anolis carolinensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSACAG00000017316 T34750_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.797
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.797
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.797
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000017072 RRM 48 101
ENSACAP00000017072 RRM 171 237
ENSACAP00000017072 RRM 347 413
ENSACAP00000017072 RRM 464 528

Links

Other RRM family RBPs
Other Anolis carolinensis RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.937
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.933
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.929
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.925
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.925
ROD1 Homo sapiens ENSG00000119314 I 0.925
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.925
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.925
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.925
ROD1 Equus caballus ENSECAG00000021243 I 0.921
ROD1 Sus scrofa ENSSSCG00000005466 I 0.921
Rod1 Mus musculus ENSMUSG00000028382 I 0.917
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.917
ROD1 Bos taurus ENSBTAG00000016750 I 0.913
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.913
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.881
ROD1 Canis familiaris ENSCAFG00000003015 I 0.877
ROD1 Danio rerio ENSDARG00000043757 I 0.828
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.826
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.814
ROD1 Sorex araneus ENSSARG00000002649 N 0.806
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.802
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.801
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.801
ROD1 Procavia capensis ENSPCAG00000002288 N 0.798
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.798
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.794
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.794
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.794
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.791
AAF00041 Xenopus laevis AAF00041 I 0.790
PTBP1 Homo sapiens ENSG00000011304 D 0.790
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.790
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.790
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.789
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.789
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.786
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.786
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.786
PTBP1 Equus caballus ENSECAG00000018845 I 0.786
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.785
AAH45068 Xenopus laevis AAH45068 I 0.783
ptbp1a Danio rerio ENSDARG00000019362 I 0.783
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.782
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.775
ptbp1b Danio rerio ENSDARG00000031907 I 0.774
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.766
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.764
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.761
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.750
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.746
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.743
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.743
ROD1 Vicugna pacos ENSVPAG00000006136 N 0.743
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.739
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.738
AAH97557 Xenopus laevis AAH97557 I 0.735
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.733
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.732
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.732
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.729
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.729
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.729
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.729
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.729
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.729
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.729
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.729
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.729
PTBP2 Homo sapiens ENSG00000117569 I 0.729
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.729
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.729
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.729
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.729
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.729
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.729
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.728
LOC100057336 Equus caballus ENSECAG00000015783 I 0.726
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.725
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.725
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.725
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.719
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.717
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.712
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.708
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.704
ROD1 Pteropus vampyrus ENSPVAG00000002177 N 0.704