CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ROD1
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000001755
T37754_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.801
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.801
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.801
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000001731
RRM
33
86
LHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY
ENSGGOP00000001731
RRM
156
222
IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCT
ENSGGOP00000001731
RRM
332
399
LLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQALAMNHLSGQRLYGKVLR
ENSGGOP00000001731
RRM
450
514
LHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH
ENSGGOP00000024307
RRM
67
120
LHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY
ENSGGOP00000024307
RRM
190
256
IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCT
ENSGGOP00000024307
RRM
366
432
LLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR
ENSGGOP00000024307
RRM
483
547
LHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
88 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ROD1
Pan troglodytes
ENSPTRG00000021263
I
1.000
ROD1
Homo sapiens
ENSG00000119314
I
1.000
ROD1
Macaca mulatta
ENSMMUG00000000464
I
1.000
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.996
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.996
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.988
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.984
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.976
ROD1
Equus caballus
ENSECAG00000021243
I
0.972
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.972
Rod1
Mus musculus
ENSMUSG00000028382
I
0.972
ROD1
Bos taurus
ENSBTAG00000016750
I
0.969
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.968
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.945
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.937
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.925
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.885
ROD1
Tursiops truncatus
ENSTTRG00000009283
N
0.866
ROD1
Tarsius syrichta
ENSTSYG00000010375
N
0.862
ROD1
Sorex araneus
ENSSARG00000002649
N
0.850
ROD1
Choloepus hoffmanni
ENSCHOG00000002039
N
0.850
ROD1
Procavia capensis
ENSPCAG00000002288
N
0.842
ROD1
Danio rerio
ENSDARG00000043757
I
0.832
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.801
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.801
AAF00041
Xenopus laevis
AAF00041
I
0.798
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.798
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.794
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.794
PTBP1
Homo sapiens
ENSG00000011304
D
0.794
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.794
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.794
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.794
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.793
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.793
ROD1
Vicugna pacos
ENSVPAG00000006136
N
0.791
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.790
AAH45068
Xenopus laevis
AAH45068
I
0.787
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.786
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.786
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.786
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.785
PTBP1
Equus caballus
ENSECAG00000018845
I
0.778
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.778
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.771
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.767
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.763
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.760
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.759
ROD1
Pteropus vampyrus
ENSPVAG00000002177
N
0.751
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.750
ROD1
Taeniopygia guttata
ENSTGUG00000001262
N
0.749
AAH97557
Xenopus laevis
AAH97557
I
0.747
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.747
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.747
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.746
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.739
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.738
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.736
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.733
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.733
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.733
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.733
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.733
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.733
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.733
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.733
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.733
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.733
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.733
PTBP2
Homo sapiens
ENSG00000117569
I
0.733
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.733
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.733
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.733
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.733
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.732
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.730
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.729
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.729
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.729
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.728
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.721
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.720
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.719
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.712
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.708
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.700