CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ROD1
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000005502
T39086_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.805
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.805
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.805
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000006809
RRM
47
100
LHLRKIPNDVTETEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY
ENSMODP00000006809
RRM
170
236
IIVENLFYPVTLEVLYQIFSKFGTVLRIITFTKNNQFQALLQYADPLNAHYAKMTLDGQNIYNACCT
ENSMODP00000006809
RRM
320
386
LLVSNLNPDAITPHGLFILFGVYGDVQRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR
ENSMODP00000006809
RRM
437
501
LHLSNIPPSVMVDDLKNLFTEAGCTVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH
ENSMODP00000006813
RRM
22
75
LHLRKIPNDVTETEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY
ENSMODP00000006813
RRM
145
211
IIVENLFYPVTLEVLYQIFSKFGTVLRIITFTKNNQFQALLQYADPLNAHYAKMTLDGQNIYNACCT
ENSMODP00000006813
RRM
302
368
LLVSNLNPDAITPHGLFILFGVYGDVQRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR
ENSMODP00000006813
RRM
419
483
LHLSNIPPSVMVDDLKNLFTEAGCTVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH
ENSMODP00000006815
RRM
47
100
LHLRKIPNDVTETEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY
ENSMODP00000006815
RRM
170
236
IIVENLFYPVTLEVLYQIFSKFGTVLRIITFTKNNQFQALLQYADPLNAHYAKMTLDGQNIYNACCT
ENSMODP00000006815
RRM
346
412
LLVSNLNPDAITPHGLFILFGVYGDVQRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR
ENSMODP00000006815
RRM
463
527
LHLSNIPPSVMVDDLKNLFTEAGCTVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
88 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.949
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.949
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.949
ROD1
Equus caballus
ENSECAG00000021243
I
0.945
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.945
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.945
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.945
ROD1
Homo sapiens
ENSG00000119314
I
0.945
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.945
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.945
ROD1
Bos taurus
ENSBTAG00000016750
I
0.937
Rod1
Mus musculus
ENSMUSG00000028382
I
0.937
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.933
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.933
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.929
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.901
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.881
ROD1
Tursiops truncatus
ENSTTRG00000009283
N
0.838
ROD1
Sorex araneus
ENSSARG00000002649
N
0.838
ROD1
Danio rerio
ENSDARG00000043757
I
0.824
ROD1
Choloepus hoffmanni
ENSCHOG00000002039
N
0.818
ROD1
Procavia capensis
ENSPCAG00000002288
N
0.810
ROD1
Tarsius syrichta
ENSTSYG00000010375
N
0.806
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.805
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.805
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.802
PTBP1
Homo sapiens
ENSG00000011304
D
0.798
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.798
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.798
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.798
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.798
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.798
AAF00041
Xenopus laevis
AAF00041
I
0.794
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.794
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.793
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.793
AAH45068
Xenopus laevis
AAH45068
I
0.791
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.790
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.789
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.786
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.786
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.786
PTBP1
Equus caballus
ENSECAG00000018845
I
0.786
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.779
ROD1
Taeniopygia guttata
ENSTGUG00000001262
N
0.773
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.771
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.770
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.767
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.767
ROD1
Vicugna pacos
ENSVPAG00000006136
N
0.763
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.759
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.751
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.750
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.750
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.747
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.742
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.739
AAH97557
Xenopus laevis
AAH97557
I
0.739
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.736
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.733
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.733
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.733
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.733
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.733
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.733
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.733
PTBP2
Homo sapiens
ENSG00000117569
I
0.733
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.733
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.733
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.733
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.733
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.733
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.733
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.733
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.733
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.732
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.732
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.730
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.729
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.729
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.729
ROD1
Pteropus vampyrus
ENSPVAG00000002177
N
0.723
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.723
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.721
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.719
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.712
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.708