CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ROD1
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000017670
T39731_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.805
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.805
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.805
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000015175
RRM
47
100
LHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY
ENSOCUP00000015175
RRM
170
236
IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCT
ENSOCUP00000015175
RRM
346
412
LLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR
ENSOCUP00000015175
RRM
463
527
LHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
87 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.996
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.996
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.996
ROD1
Homo sapiens
ENSG00000119314
I
0.996
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.992
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.992
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.980
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.980
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.976
ROD1
Equus caballus
ENSECAG00000021243
I
0.976
Rod1
Mus musculus
ENSMUSG00000028382
I
0.976
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.972
ROD1
Bos taurus
ENSBTAG00000016750
I
0.969
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.949
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.941
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.929
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.881
ROD1
Tursiops truncatus
ENSTTRG00000009283
N
0.870
ROD1
Tarsius syrichta
ENSTSYG00000010375
N
0.858
ROD1
Sorex araneus
ENSSARG00000002649
N
0.854
ROD1
Choloepus hoffmanni
ENSCHOG00000002039
N
0.854
ROD1
Procavia capensis
ENSPCAG00000002288
N
0.846
ROD1
Danio rerio
ENSDARG00000043757
I
0.836
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.805
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.805
AAF00041
Xenopus laevis
AAF00041
I
0.802
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.802
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.798
PTBP1
Homo sapiens
ENSG00000011304
D
0.798
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.798
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.798
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.798
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.798
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.797
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.797
ROD1
Vicugna pacos
ENSVPAG00000006136
N
0.794
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.794
AAH45068
Xenopus laevis
AAH45068
I
0.791
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.790
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.790
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.790
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.789
PTBP1
Equus caballus
ENSECAG00000018845
I
0.782
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.782
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.775
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.771
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.767
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.764
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.762
ROD1
Pteropus vampyrus
ENSPVAG00000002177
N
0.755
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.754
ROD1
Taeniopygia guttata
ENSTGUG00000001262
N
0.753
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.751
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.751
AAH97557
Xenopus laevis
AAH97557
I
0.751
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.750
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.743
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.742
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.740
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.736
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.736
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.736
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.736
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.736
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.736
PTBP2
Homo sapiens
ENSG00000117569
I
0.736
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.736
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.736
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.736
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.736
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.736
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.736
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.736
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.736
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.736
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.735
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.734
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.733
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.733
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.733
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.732
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.725
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.724
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.723
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.712
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.708
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.704