PABPC1L (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000017903 T42169_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.787
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.787
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.787
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.738
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000021063 RRM 13 72
ENSTNIP00000021063 RRM 98 166
ENSTNIP00000021063 RRM 190 259
ENSTNIP00000021063 RRM 293 361

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.890
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.866
pabpc1l Danio rerio ENSDARG00000002597 I 0.816
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.784
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.784
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.784
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.784
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.784
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.784
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.784
AAH80020 Xenopus laevis AAH80020 I 0.781
AAK29408 Xenopus laevis AAK29408 I 0.781
PABPC1 Homo sapiens ENSG00000070756 D 0.781
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.781
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.781
Q98SP8 Xenopus laevis Q98SP8 I 0.781
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.781
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.781
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.781
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.781
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.781
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.781
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.781
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.781
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.781
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.781
Q6GR16 Xenopus laevis Q6GR16 I 0.774
AAH71118 Xenopus laevis AAH71118 I 0.774
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.774
pabpc1b Danio rerio ENSDARG00000021140 I 0.771
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.770
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.770
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.767
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.767
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.767
pabpc1a Danio rerio ENSDARG00000017219 I 0.767
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.767
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.767
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.767
AAI08463 Xenopus laevis AAI08463 I 0.763
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.763
Q6IP09 Xenopus laevis Q6IP09 I 0.763
AAH72110 Xenopus laevis AAH72110 I 0.763
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.760
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.760
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.760
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.756
PABPC1L Gallus gallus ENSGALG00000004123 I 0.756
P20965 Xenopus laevis P20965 I 0.756
AAH52100 Xenopus laevis AAH52100 I 0.756
CAA40721 Xenopus laevis CAA40721 I 0.756
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.753
AAA60936 Xenopus laevis AAA60936 I 0.753
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.749
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.749
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.748
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.746
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.746
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.746
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.740
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.739
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.739
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.735
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.735
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.731
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.731
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.731
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.731
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.731
LOC100054235 Equus caballus ENSECAG00000009396 I 0.731
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.731
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.728
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.728
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.728
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.728
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.728
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.728
AAH73435 Xenopus laevis AAH73435 I 0.728
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.728
PABPC4 Homo sapiens ENSG00000090621 D 0.728
PABPC3 Homo sapiens ENSG00000151846 D 0.728
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.728
PABPC4 Gallus gallus ENSGALG00000003800 I 0.724
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.724
Gm10110 Mus musculus ENSMUSG00000062093 I 0.724
pabpc4 Danio rerio ENSDARG00000059259 I 0.721
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.721
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.721
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.721
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.721
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.717
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.717
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.717
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.717
PABPC1L Bos taurus ENSBTAG00000016849 I 0.717
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.717
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.714
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.714
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.714
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.714
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.714
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.711
PABPC1L Homo sapiens ENSG00000101104 I 0.710
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.710
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.710
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.710
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.710
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.710
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.707
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.707
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.707
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.707
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.703