AT1G78260 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT1G78260-TAIR-G T32684_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G78260.1-P RRM 19 87
AT1G78260.2-P RRM 19 87

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.971
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.971
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.957
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.899
ppa018926m Prunus persica ppa018926m I 0.884
ppa019392m Prunus persica ppa019392m I 0.884
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.870
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.870
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.870
PK15672.1 Cannabis sativa PK15672.1 I 0.870
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.855
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.841
MDP0000134468 Malus x domestica MDP0000134468 I 0.841
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.841
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.826
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.826
MDP0000233609 Malus x domestica MDP0000233609 I 0.812
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.812
29908.m006046 Ricinus communis 29908.m006046 I 0.812
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.783
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.783
ppa009716m Prunus persica ppa009716m I 0.783
ppa009964m Prunus persica ppa009964m I 0.783
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.768
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.768
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.768
mgf017214m Mimulus guttatus mgf017214m I 0.768
PK21213.1 Cannabis sativa PK21213.1 I 0.768
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.768
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.768
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.768
MDP0000284454 Malus x domestica MDP0000284454 I 0.768
MDP0000138486 Malus x domestica MDP0000138486 I 0.754
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.754
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.754
CU179634_3 Medicago truncatula CU179634_3 I 0.754
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.754
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.754
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.739
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.739
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.739
30076.m004440 Ricinus communis 30076.m004440 I 0.739
ppa016222m Prunus persica ppa016222m I 0.739
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.739
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.739
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.739
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.739
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.739
MDP0000744398 Malus x domestica MDP0000744398 I 0.725
MDP0000548950 Malus x domestica MDP0000548950 I 0.725
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.725
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.725
MDP0000488395 Malus x domestica MDP0000488395 I 0.725
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.725
MDP0000184420 Malus x domestica MDP0000184420 I 0.725
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.725
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710
PK14266.1 Cannabis sativa PK14266.1 I 0.710
MDP0000118777 Malus x domestica MDP0000118777 I 0.710
MDP0000857317 Malus x domestica MDP0000857317 I 0.710