XM_002887685.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.2__2123__AT1G78260.1 T44507_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__2123__AT1G78260.1 RRM 19 87

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.971
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.971
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.957
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.884
ppa018926m Prunus persica ppa018926m I 0.870
ppa019392m Prunus persica ppa019392m I 0.870
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.855
PK15672.1 Cannabis sativa PK15672.1 I 0.855
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.855
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.855
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.841
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.826
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.826
MDP0000134468 Malus x domestica MDP0000134468 I 0.826
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.812
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.812
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.797
MDP0000233609 Malus x domestica MDP0000233609 I 0.797
29908.m006046 Ricinus communis 29908.m006046 I 0.797
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.783
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.783
MDP0000284454 Malus x domestica MDP0000284454 I 0.768
ppa009716m Prunus persica ppa009716m I 0.768
ppa009964m Prunus persica ppa009964m I 0.768
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.768
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.768
mgf017214m Mimulus guttatus mgf017214m I 0.754
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.754
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.754
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.754
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.754
PK21213.1 Cannabis sativa PK21213.1 I 0.754
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.754
MDP0000184420 Malus x domestica MDP0000184420 I 0.739
CU179634_3 Medicago truncatula CU179634_3 I 0.739
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.739
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.739
MDP0000138486 Malus x domestica MDP0000138486 I 0.739
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.739
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.739
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.725
30076.m004440 Ricinus communis 30076.m004440 I 0.725
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.725
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.725
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.725
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.725
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.725
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.725
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.710
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.710
MDP0000548950 Malus x domestica MDP0000548950 I 0.710
MDP0000488395 Malus x domestica MDP0000488395 I 0.710
MDP0000744398 Malus x domestica MDP0000744398 I 0.710
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.710
ppa016222m Prunus persica ppa016222m I 0.710
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.710
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.710