CM1092.170.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CM1092.170.nc T55917_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
CM1092.170.nc RRM 8 76
CM1092.170.nc RRM 107 178

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.801
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.801
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.787
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.780
MDP0000320618 Malus x domestica MDP0000320618 N 0.773
MDP0000907782 Malus x domestica MDP0000907782 N 0.773
30048.m000319 Ricinus communis 30048.m000319 N 0.766
ppa005132m Prunus persica ppa005132m N 0.766
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.766
ppa005119m Prunus persica ppa005119m N 0.766
MDP0000642684 Malus x domestica MDP0000642684 N 0.759
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.752
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.752
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.745
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.745
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.745
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.745
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.745
PK13457.1 Cannabis sativa PK13457.1 N 0.738
mgf012147m Mimulus guttatus mgf012147m N 0.738
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.738
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.738
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.730
mgf009385m Mimulus guttatus mgf009385m N 0.730
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.730
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.730
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.730
PK25912.1 Cannabis sativa PK25912.1 N 0.730
ppa005122m Prunus persica ppa005122m N 0.730
ppa004834m Prunus persica ppa004834m N 0.730
29608.m000212 Ricinus communis 29608.m000212 N 0.730
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.730
MDP0000188788 Malus x domestica MDP0000188788 N 0.730
MDP0000204698 Malus x domestica MDP0000204698 N 0.730
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.730
MDP0000609551 Malus x domestica MDP0000609551 N 0.730
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.723
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.723
27613.m000635 Ricinus communis 27613.m000635 N 0.723
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.723
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.723
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.723
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.716
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.716
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.709
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.709
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.709
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.709
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.702