Medtr4g155980 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr4g155980 T54529_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr4g155980.1 RRM 1 59
Medtr4g155980.1 RRM 91 160

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.899
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.849
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.849
ppa005132m Prunus persica ppa005132m N 0.835
ppa005119m Prunus persica ppa005119m N 0.827
MDP0000320618 Malus x domestica MDP0000320618 N 0.827
MDP0000907782 Malus x domestica MDP0000907782 N 0.820
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.820
30048.m000319 Ricinus communis 30048.m000319 N 0.813
MDP0000642684 Malus x domestica MDP0000642684 N 0.813
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.799
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.791
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.791
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.791
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.791
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.784
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.784
PK13457.1 Cannabis sativa PK13457.1 N 0.784
MDP0000609551 Malus x domestica MDP0000609551 N 0.777
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.777
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.777
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.777
MDP0000188788 Malus x domestica MDP0000188788 N 0.777
MDP0000204698 Malus x domestica MDP0000204698 N 0.777
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.777
29608.m000212 Ricinus communis 29608.m000212 N 0.777
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.770
PK25912.1 Cannabis sativa PK25912.1 N 0.770
mgf012147m Mimulus guttatus mgf012147m N 0.770
ppa004834m Prunus persica ppa004834m N 0.770
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.770
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.770
mgf009385m Mimulus guttatus mgf009385m N 0.770
ppa005122m Prunus persica ppa005122m N 0.770
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.764
27613.m000635 Ricinus communis 27613.m000635 N 0.763
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.763
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.763
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.757
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.757
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.755
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.755
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.752
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.748
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.748
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.748
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.748
mgf009486m Mimulus guttatus mgf009486m N 0.743
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.741
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.741
mgf004139m Mimulus guttatus mgf004139m N 0.741
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.734
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.727
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.727
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.719
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.719
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.719
SB02G005670 Sorghum bicolor Sb02g005670 N 0.719
SB02G005620 Sorghum bicolor Sb02g005620 N 0.719
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.719
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.719
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.712
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.709
SB02G037690 Sorghum bicolor Sb02g037690 N 0.705
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.705