CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr4g155980
(
Medicago truncatula
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Medtr4g155980
T54529_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr4g155980.1
RRM
1
59
MKDGLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVE
Medtr4g155980.1
RRM
91
160
IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Medicago truncatula
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.899
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.849
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.849
ppa005132m
Prunus persica
ppa005132m
N
0.835
ppa005119m
Prunus persica
ppa005119m
N
0.827
MDP0000320618
Malus x domestica
MDP0000320618
N
0.827
MDP0000907782
Malus x domestica
MDP0000907782
N
0.820
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.820
30048.m000319
Ricinus communis
30048.m000319
N
0.813
MDP0000642684
Malus x domestica
MDP0000642684
N
0.813
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.799
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.791
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.791
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.791
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.791
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.784
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.784
PK13457.1
Cannabis sativa
PK13457.1
N
0.784
MDP0000609551
Malus x domestica
MDP0000609551
N
0.777
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.777
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.777
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.777
MDP0000188788
Malus x domestica
MDP0000188788
N
0.777
MDP0000204698
Malus x domestica
MDP0000204698
N
0.777
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.777
29608.m000212
Ricinus communis
29608.m000212
N
0.777
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.770
PK25912.1
Cannabis sativa
PK25912.1
N
0.770
mgf012147m
Mimulus guttatus
mgf012147m
N
0.770
ppa004834m
Prunus persica
ppa004834m
N
0.770
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.770
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.770
mgf009385m
Mimulus guttatus
mgf009385m
N
0.770
ppa005122m
Prunus persica
ppa005122m
N
0.770
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.764
27613.m000635
Ricinus communis
27613.m000635
N
0.763
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.763
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.763
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.757
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.757
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.755
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.755
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.752
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.748
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.748
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.748
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.748
mgf009486m
Mimulus guttatus
mgf009486m
N
0.743
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.741
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.741
mgf004139m
Mimulus guttatus
mgf004139m
N
0.741
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.734
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.727
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.727
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.719
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.719
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.719
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.719
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.719
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.719
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.719
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.712
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.709
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.705
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.705