ybx2-a (Xenopus laevis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 AAI69706 T17424_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ybx2-a
M250_0.6		 Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		(Direct)
ybx2-a
M254_0.6		 Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		(Direct)
ybx2-a
M260_0.6		 Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.958
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.931
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.931
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAI69706 CSD 41 111

Links

Other CSD family RBPs
Other Xenopus laevis RBPs

203 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006300 Ricinus communis 30169.m006300 N 0.000
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.000
BRADI4G34110 Brachypodium distachyon BRADI4G34110 N 0.000
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.000
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.000
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.000
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.000
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.000
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.000
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.000
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.000
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.000
LOC_Os09g32210 Oryza sativa LOC_Os09g32210 N 0.000
MDP0000265231 Malus x domestica MDP0000265231 N 0.000
MDP0000277305 Malus x domestica MDP0000277305 N 0.000
MDP0000313902 Malus x domestica MDP0000313902 N 0.000
PK12245.1 Cannabis sativa PK12245.1 N 0.000
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.000
ppa000898m Prunus persica ppa000898m N 0.000
ppa016404m Prunus persica ppa016404m N 0.000
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.000