CELF3 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000012064 T42327_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.807
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000030511 RRM 1 33
ENSTRUP00000030511 RRM 52 120
ENSTRUP00000030511 RRM 351 421
ENSTRUP00000030512 RRM 1 33
ENSTRUP00000030512 RRM 52 120
ENSTRUP00000030512 RRM 275 345
ENSTRUP00000030513 RRM 49 117
ENSTRUP00000030513 RRM 334 404
ENSTRUP00000030514 RRM 1 30
ENSTRUP00000030514 RRM 58 126
ENSTRUP00000030514 RRM 317 355

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62054 Helobdella robusta 62054 I 0.736
90208 Helobdella robusta 90208 I 0.723
AAA81375 Xenopus laevis AAA81375 I 0.748
AAEL014033 Aedes aegypti AAEL014033 I 0.793
AAH46942 Xenopus laevis AAH46942 I 0.738
AAH57704 Xenopus laevis AAH57704 I 0.748
AAH72134 Xenopus laevis AAH72134 I 0.748
AGAP004950 Anopheles gambiae AGAP004950 I 0.793
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.793
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.738
CJA07020 Caenorhabditis japonica CJA07020 I 0.721
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.814
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.700
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.738
CELF5 Bos taurus ENSBTAG00000021774 I 0.782
CELF3 Canis familiaris ENSCAFG00000012794 I 0.738
CELF5 Canis familiaris ENSCAFG00000019263 I 0.798
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.738
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.807
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.814
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.700
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.738
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.807
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.815
CELF3 Danio rerio ENSDARG00000006983 I 0.700
celf3 Danio rerio ENSDARG00000034668 I 0.776
celf4 Danio rerio ENSDARG00000070045 I 0.838
Celf3 Dipodomys ordii ENSDORG00000002488 N 0.701
Celf5 Dipodomys ordii ENSDORG00000005915 I 0.769
CELF3 Equus caballus ENSECAG00000020365 I 0.738
CELF5 Echinops telfairi ENSETEG00000016221 I 0.769
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.793
BRUNOL6 Homo sapiens ENSG00000140488 D 0.814
CELF3 Homo sapiens ENSG00000159409 I 0.856
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.795
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.729
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.800
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.843
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.857
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.836
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.787
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.700
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.749
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.907
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.843
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.738
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.809
CELF3 Microcebus murinus ENSMICG00000010644 N 0.884
HEXA Macaca mulatta ENSMMUG00000010687 I 0.814
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.833
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.836
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.738
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.821
Celf3 Mus musculus ENSMUSG00000028137 I 0.738
Celf6 Mus musculus ENSMUSG00000032297 I 0.821
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.850
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.700
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.738
CELF5 Otolemur garnettii ENSOGAG00000014161 I 0.775
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.771
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.734
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.814
CELF4 Oryzias latipes ENSORLG00000008913 I 0.712
CELF3 Oryzias latipes ENSORLG00000010447 I 0.702
CELF6 Oryzias latipes ENSORLG00000013392 I 0.843
CELF3 Procavia capensis ENSPCAG00000001623 I 0.751
CELF5 Procavia capensis ENSPCAG00000002170 I 0.770
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.738
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.814
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.792
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.836
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.738
CELF3 Sus scrofa ENSSSCG00000006618 I 0.749
CELF5 Sus scrofa ENSSSCG00000013476 I 0.787
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.821
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.809
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.836
BRUNOL6 Taeniopygia guttata ENSTGUG00000004278 N 0.711
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.724
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.807
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.836
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.705
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.807
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.792
CELF6 Vicugna pacos ENSVPAG00000002850 N 0.707
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.700
GF10965 Drosophila ananassae FBgn0088005 I 0.807
GG13757 Drosophila erecta FBgn0106020 I 0.807
GH14684 Drosophila grimshawi FBgn0122160 I 0.807
GI13095 Drosophila mojavensis FBgn0135852 I 0.807
GL21647 Drosophila persimilis FBgn0159240 I 0.793
GM24582 Drosophila sechellia FBgn0179445 I 0.807
GD12651 Drosophila simulans FBgn0184378 I 0.807
GJ13842 Drosophila virilis FBgn0201061 I 0.807
GK17101 Drosophila willistoni FBgn0219100 I 0.807
GE20053 Drosophila yakuba FBgn0237378 I 0.807
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.814
bru-3 Drosophila melanogaster FBgn0262350 D 0.807
LOAG_05508 Loa loa LOAG_05508 I 0.736
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.764
PHUM315130 Pediculus humanus PHUM315130 I 0.800
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.738
Q91579 Xenopus laevis Q91579 I 0.748
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.714
Smp_041280 Schistosoma mansoni Smp_041280 I 0.771
Smp_131780 Schistosoma mansoni Smp_131780 I 0.721