Glyma02g11580.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma02g11580.1 T52599_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma02g11580.1 RRM 30 100
Glyma02g11580.1 RRM 118 187
Glyma02g11580.1 RRM 209 278
Glyma02g11580.1 RRM 312 381

Links

Other RRM family RBPs
Other Glycine max RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28644.m000904 Ricinus communis 28644.m000904 N 0.701
29801.m003152 Ricinus communis 29801.m003152 N 0.886
30170.m013847 Ricinus communis 30170.m013847 N 0.851
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.811
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.776
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.722
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.797
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.744
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.766
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.758
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.734
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.744
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.740
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.847
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.851
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.893
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.861
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.883
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.765
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.769
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.762
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.733
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.762
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.769
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.772
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.979
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.840
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.840
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.701
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.737
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.719
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.744
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.868
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.851
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.754
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.744
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.744
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.766
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.758
MDP0000156895 Malus x domestica MDP0000156895 N 0.883
MDP0000212007 Malus x domestica MDP0000212007 N 0.712
MDP0000253709 Malus x domestica MDP0000253709 N 0.883
MDP0000283985 Malus x domestica MDP0000283985 N 0.797
MDP0000286821 Malus x domestica MDP0000286821 N 0.712
MDP0000497543 Malus x domestica MDP0000497543 N 0.886
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.822
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.840
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.918
mgf004596m Mimulus guttatus mgf004596m N 0.790
mgf004973m Mimulus guttatus mgf004973m N 0.822
mgf005294m Mimulus guttatus mgf005294m N 0.808
mgf009542m Mimulus guttatus mgf009542m N 0.833
PK00659.1 Cannabis sativa PK00659.1 N 0.779
PK02172.1 Cannabis sativa PK02172.1 N 0.851
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.886
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.858
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.883
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.858
ppa002607m Prunus persica ppa002607m N 0.879
ppa002618m Prunus persica ppa002618m N 0.826
ppa002620m Prunus persica ppa002620m N 0.826
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.726
SB06G021850 Sorghum bicolor Sb06g021850 N 0.744
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.779
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.797
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.722