CBF67555 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBF67555 T59692_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.907
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.907
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.907
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.886
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBF67555 RRM 16 85
CBF67555 RRM 107 176

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

294 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 1.000
AAA49742 Xenopus laevis AAA49742 I 1.000
AAA49949 Xenopus laevis AAA49949 I 0.821
AAA49950 Xenopus laevis AAA49950 I 0.817
AAH45260 Xenopus laevis AAH45260 I 0.964
AAH72090 Xenopus laevis AAH72090 I 0.986
AAI69881 Xenopus laevis AAI69881 I 0.817
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.907
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.745
CBF67578 Xenopus laevis CBF67578 I 0.817
CBF67672 Xenopus laevis CBF67672 I 0.986
CBU92428 Xenopus laevis CBU92428 I 1.000
CBU92451 Xenopus laevis CBU92451 I 0.817
CBU92546 Xenopus laevis CBU92546 I 0.986
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.907
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.829
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.907
LOC781499 Bos taurus ENSBTAG00000021580 I 0.823
LOC785445 Bos taurus ENSBTAG00000025621 I 0.858
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.803
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.871
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.789
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.864
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.907
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.837
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.864
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.893
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.831
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.823
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.838
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.818
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.810
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.000
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.886
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.830
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.831
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.886
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.900
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.844
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.757
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.780
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.886
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.864
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.844
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.837
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.907
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.907
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.823
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.879
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.879
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.850
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.907
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.837
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.823
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.823
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.879
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.814
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.814
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.907
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.823
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.836
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.759
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.907
LOC100066794 Equus caballus ENSECAG00000023237 I 0.821
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.857
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.000
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.893
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.823
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.907
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.821
HNRNPA1 Homo sapiens ENSG00000135486 D 0.907
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.886
HNRNPA3 Homo sapiens ENSG00000170144 I 0.823
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.907
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.789
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.879
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.836
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.907
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.823
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.743
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.893
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.757
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.893
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.773
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.907
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.879
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.823
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.887
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.836
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.789
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.907
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.817
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.900
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.823
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.823
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.844
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.900
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.886
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.907
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.900
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.886
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.830
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.823
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.000
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.879
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.907
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.823
Gm8991 Mus musculus ENSMUSG00000059179 I 0.821
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.816
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.000
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.893
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.907
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.886
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.893
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.900
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.844
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.879
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.893
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.900
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.907
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.893
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.900
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.900
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.871
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.796
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.787
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.000
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.794
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.736
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.864
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.907
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.823
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.750
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.907
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.907
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.907
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.907
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.823
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.823
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.768
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.871
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.000
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.823
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.759
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.864
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.000
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.000
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.000
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.830
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.823
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.766
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.871
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.000
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.000
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.743
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.800
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.852
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.000
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.907
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.814
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.871
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.732
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.000
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.000
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.771
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.836
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.907
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.823
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.773
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.907
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.837
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.858
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.836
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.836
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.779
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.857
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.768
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.907
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.823
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.000
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.829
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.964
P17130 Xenopus laevis P17130 I 1.000
P51968 Xenopus laevis P51968 I 0.821
P51992 Xenopus laevis P51992 I 0.817