ppa009316m (Prunus persica)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		ppa009316m T00230_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa009316m CCCH ZF 37 61
ppa009316m CCCH ZF 102 127
ppa009316m KH 171 233
ppa009316m CCCH ZF 264 289

Links

Other CCCH ZF,KH family RBPs
Other Prunus persica RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009199m Prunus persica ppa009199m N 0.900
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.821
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.732
mgf010445m Mimulus guttatus mgf010445m N 0.814
mgf003025m Mimulus guttatus mgf003025m N 0.800
mgf001428m Mimulus guttatus mgf001428m N 0.745
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.843
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.907
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.843
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.900
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.810
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.780
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.790
MDP0000275117 Malus x domestica MDP0000275117 N 0.786
MDP0000217837 Malus x domestica MDP0000217837 N 0.921
MDP0000202971 Malus x domestica MDP0000202971 N 0.886
MDP0000176924 Malus x domestica MDP0000176924 N 0.886
MDP0000130160 Malus x domestica MDP0000130160 N 0.786
MDP0000120315 Malus x domestica MDP0000120315 N 0.786
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.893
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.866
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.757
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.900
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.900
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.766
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.852
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.796
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.837
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.838
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.830
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.825
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.803
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.725
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.766
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.852
SB04G006450 Sorghum bicolor Sb04g006450 N 0.807
SB06G032000 Sorghum bicolor Sb06g032000 N 0.809
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.914
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.886
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.814
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.914
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.872
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.843
27843.m000162 Ricinus communis 27843.m000162 N 0.907
27843.m000161 Ricinus communis 27843.m000161 N 0.900
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.810
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.838