CSDA (Monodelphis domestica)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSMODG00000018248 T16921_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.986
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.986
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.917
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.917
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.917
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.903
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000022758 CSD 4 74
ENSMODP00000035630 CSD 4 74

Links

Other CSD family RBPs
Other Monodelphis domestica RBPs

209 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ybx2-a Xenopus laevis AAI69706 D 0.944
YB-1 Homo sapiens ENSG00000065978 D 0.986
YBX2 Homo sapiens ENSG00000006047 D 0.930
GI13673 Drosophila mojavensis FBgn0136428 I 0.806
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.986
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.986
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.986
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.836
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.986
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.836
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.986
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.859
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.986
GM24682 Drosophila sechellia FBgn0179545 I 0.792
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.986
GL15684 Drosophila persimilis FBgn0153288 I 0.806
csda Xenopus tropicalis ENSXETG00000016239 I 0.958
cey-1 Caenorhabditis elegans F33A8.3 I 0.750
yps Drosophila melanogaster FBgn0022959 I 0.792
GF10852 Drosophila ananassae FBgn0087892 I 0.806
GH16919 Drosophila grimshawi FBgn0124390 I 0.806
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.944
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.986
Csda Rattus norvegicus ENSRNOG00000005480 I 0.986
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.986
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.986
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.930
CSDA Procavia capensis ENSPCAG00000001397 I 0.915
CSDA Pan troglodytes ENSPTRG00000004681 I 0.986
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.986
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.986
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.958
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.944
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.972
YBX2 Sus scrofa ENSSSCG00000017938 I 0.944
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.847
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.958
CSDA Sus scrofa ENSSSCG00000000633 I 0.986
YBX2 Sorex araneus ENSSARG00000000488 I 0.930
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.847
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.930
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.986
YBX2 Procavia capensis ENSPCAG00000008019 I 0.944
GD12750 Drosophila simulans FBgn0184477 I 0.792
Q00436 Xenopus laevis Q00436 I 0.986
AAA49924 Xenopus laevis AAA49924 I 0.930
AAA49716 Xenopus laevis AAA49716 I 0.944
AAA49715 Xenopus laevis AAA49715 I 0.986
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.819
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.847
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.847
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.819
Minc12652 Meloidogyne incognita Minc12652 I 0.708
AAH41191 Xenopus laevis AAH41191 I 0.986
AAH42217 Xenopus laevis AAH42217 I 0.986
AAI06324 Xenopus laevis AAI06324 I 0.986
P45441 Xenopus laevis P45441 I 0.930
P21574 Xenopus laevis P21574 I 0.944
P21573 Xenopus laevis P21573 I 0.986
CAA42778 Xenopus laevis CAA42778 I 0.986
AAI69704 Xenopus laevis AAI69704 I 0.944
AAI55915 Xenopus laevis AAI55915 I 0.944
AAI55914 Xenopus laevis AAI55914 I 0.930
AAI30161 Xenopus laevis AAI30161 I 0.986
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.764
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.806
133388 Helobdella robusta 133388 I 0.736
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.806
PHUM156720 Pediculus humanus PHUM156720 I 0.806
PHUM156710 Pediculus humanus PHUM156710 I 0.819
ISCW005281 Ixodes scapularis ISCW005281 I 0.792
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.806
GE20150 Drosophila yakuba FBgn0237472 I 0.792
GK16710 Drosophila willistoni FBgn0218712 I 0.806
146547 Helobdella robusta 146547 I 0.722
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.736
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.930
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.819
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.778
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.875
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.778
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.806
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.875
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.764
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.792
GJ14010 Drosophila virilis FBgn0201228 I 0.806
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.849
ybx1 Danio rerio ENSDARG00000004757 I 0.986
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.958
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.847
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.986
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.795
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.986
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.778
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.778
YBX2 Canis familiaris ENSCAFG00000016128 I 0.944
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.944
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.875
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.986
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.808
CSDA Cavia porcellus ENSCPOG00000011329 I 0.986
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.986
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.944
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.915
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.875
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.930
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.847
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.986
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.972
AGAP006108 Anopheles gambiae AGAP006108 I 0.764
AAEL001375 Aedes aegypti AAEL001375 I 0.764
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.806
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.833
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.833
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.833
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.764
LOAG_11791 Loa loa LOAG_11791 I 0.000
CBG02981 Caenorhabditis briggsae CBG02981 I 0.736
CBN16711 Caenorhabditis brenneri CBN16711 I 0.750
CJA05984 Caenorhabditis japonica CJA05984 I 0.722
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.833
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.986
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.930
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.986
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.986
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.944
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.958
CRE01789 Caenorhabditis remanei CRE01789 I 0.750
Bm1_57515 Brugia malayi Bm1_57515 I 0.764
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.986
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.944
CSDA Macaca mulatta ENSMMUG00000022469 I 0.986
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.986
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.986
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.958
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.875
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.861
YBX1 Microcebus murinus ENSMICG00000014984 I 0.986
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.972
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.986
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.930
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.944
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.986
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.986
Csda Mus musculus ENSMUSG00000030189 I 0.986
Ybx1 Mus musculus ENSMUSG00000028639 I 0.986
Ybx2 Mus musculus ENSMUSG00000018554 I 0.944
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.944
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.986
CSDA Loxodonta africana ENSLAFG00000017247 I 0.986
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.986
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.930
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.986
LOC100067336 Equus caballus ENSECAG00000023592 I 0.986
LOC100065107 Equus caballus ENSECAG00000013777 I 0.986
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.972
LOC100072964 Equus caballus ENSECAG00000009996 I 0.944
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.986
CSDA Echinops telfairi ENSETEG00000002557 I 0.986
CSDA Homo sapiens ENSG00000060138 I 0.986
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.986
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.944
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.986
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.958
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.930
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.986
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.986
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.986
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.849
Csda Dipodomys ordii ENSDORG00000009103 I 0.986