CSDA (Vicugna pacos)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSVPAG00000000876 T17065_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.859
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.859
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.792
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.792
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.792
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000000813 CSD 2 65

Links

Other CSD family RBPs
Other Vicugna pacos RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YB-1 Homo sapiens ENSG00000065978 D 0.859
ybx2-a Xenopus laevis AAI69706 D 0.817
YBX2 Homo sapiens ENSG00000006047 D 0.817
yps Drosophila melanogaster FBgn0022959 I 0.000
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.859
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.712
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.859
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.859
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.859
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.817
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.000
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.859
YBX2 Sus scrofa ENSSSCG00000017938 I 0.817
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.712
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.859
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.000
cey-1 Caenorhabditis elegans F33A8.3 I 0.000
csda Xenopus tropicalis ENSXETG00000016239 I 0.817
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.859
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.000
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.859
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.848
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.000
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.732
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.722
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.000
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.831
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.859
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.859
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.817
CSDA Pan troglodytes ENSPTRG00000004681 I 0.859
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.859
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.859
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.000
YBX1 Procavia capensis ENSPCAG00000008397 I 0.000
YBX2 Procavia capensis ENSPCAG00000008019 I 0.817
CSDA Procavia capensis ENSPCAG00000001397 I 0.789
Csda Rattus norvegicus ENSRNOG00000005480 I 0.859
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.831
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.000
CSDA Sus scrofa ENSSSCG00000000633 I 0.859
YBX1 Sorex araneus ENSSARG00000012628 I 0.000
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.000
YBX2 Sorex araneus ENSSARG00000000488 I 0.803
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.736
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.000
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.803
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.859
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.845
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.817
YBX2 Oryzias latipes ENSORLG00000018683 I 0.000
GF10852 Drosophila ananassae FBgn0087892 I 0.000
Q00436 Xenopus laevis Q00436 I 0.859
AAA49715 Xenopus laevis AAA49715 I 0.859
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.708
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.750
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.750
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.708
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.000
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.000
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.000
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.000
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.000
AAA49716 Xenopus laevis AAA49716 I 0.817
AAA49924 Xenopus laevis AAA49924 I 0.803
AAH41191 Xenopus laevis AAH41191 I 0.859
P45441 Xenopus laevis P45441 I 0.803
P21574 Xenopus laevis P21574 I 0.817
P21573 Xenopus laevis P21573 I 0.859
CAA42778 Xenopus laevis CAA42778 I 0.859
AAI69704 Xenopus laevis AAI69704 I 0.817
AAI55915 Xenopus laevis AAI55915 I 0.817
AAI55914 Xenopus laevis AAI55914 I 0.803
AAI30161 Xenopus laevis AAI30161 I 0.859
AAI06324 Xenopus laevis AAI06324 I 0.859
AAH42217 Xenopus laevis AAH42217 I 0.859
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.000
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.750
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.000
PHUM156710 Pediculus humanus PHUM156710 I 0.000
ISCW005281 Ixodes scapularis ISCW005281 I 0.000
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.000
GE20150 Drosophila yakuba FBgn0237472 I 0.000
GK16710 Drosophila willistoni FBgn0218712 I 0.000
GJ14010 Drosophila virilis FBgn0201228 I 0.000
GD12750 Drosophila simulans FBgn0184477 I 0.000
GM24682 Drosophila sechellia FBgn0179545 I 0.000
GL15684 Drosophila persimilis FBgn0153288 I 0.000
GI13673 Drosophila mojavensis FBgn0136428 I 0.000
PHUM156720 Pediculus humanus PHUM156720 I 0.000
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.000
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.000
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.000
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.000
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.750
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.000
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.000
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.803
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.000
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.000
146547 Helobdella robusta 146547 I 0.000
133388 Helobdella robusta 133388 I 0.000
GH16919 Drosophila grimshawi FBgn0124390 I 0.000
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.726
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.845
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.803
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.000
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.722
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.859
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.764
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.000
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.817
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.845
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.736
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.859
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.764
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.817
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.746
LOC100072964 Equus caballus ENSECAG00000009996 I 0.817
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.859
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.848
Csda Dipodomys ordii ENSDORG00000009103 I 0.859
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.879
ybx1 Danio rerio ENSDARG00000004757 I 0.859
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.000
CSDA Cavia porcellus ENSCPOG00000011329 I 0.859
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.859
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.817
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.000
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.000
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.859
CRE01789 Caenorhabditis remanei CRE01789 I 0.000
CBN16711 Caenorhabditis brenneri CBN16711 I 0.000
CBG02981 Caenorhabditis briggsae CBG02981 I 0.000
AGAP006108 Anopheles gambiae AGAP006108 I 0.000
AAEL001375 Aedes aegypti AAEL001375 I 0.000
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.000
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.708
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.708
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.708
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.000
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.831
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.817
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.859
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.000
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.000
YBX2 Canis familiaris ENSCAFG00000016128 I 0.817
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.859
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.845
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.736
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.716
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.859
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.803
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.859
Bm1_57515 Brugia malayi Bm1_57515 I 0.000
LOC100065107 Equus caballus ENSECAG00000013777 I 0.859
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.859
CSDA Monodelphis domestica ENSMODG00000018248 I 0.845
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.817
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.859
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.845
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.817
CSDA Macaca mulatta ENSMMUG00000022469 I 0.859
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.859
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.859
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.831
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.764
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.817
Ybx2 Mus musculus ENSMUSG00000018554 I 0.817
Ybx1 Mus musculus ENSMUSG00000028639 I 0.859
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.817
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.000
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.000
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.000
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.000
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.000
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.859
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.859
Csda Mus musculus ENSMUSG00000030189 I 0.859
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.736
YBX1 Microcebus murinus ENSMICG00000014984 I 0.859
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.859
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.726
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.859
CSDA Homo sapiens ENSG00000060138 I 0.859
CSDA Felis catus ENSFCAG00000018959 I 0.000
YBX2 Echinops telfairi ENSETEG00000014271 I 0.848
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.000
CSDA Echinops telfairi ENSETEG00000002557 I 0.859
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.859
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.817
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.859
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.859
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.859
YBX2 Microcebus murinus ENSMICG00000012453 I 0.000
CSDA Microcebus murinus ENSMICG00000004602 I 1.000
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.859
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.000
CSDA Loxodonta africana ENSLAFG00000017247 I 0.859
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.817
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.859
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.845
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.817
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.000
LOC100067336 Equus caballus ENSECAG00000023592 I 0.859
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.750